Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C2H97_RS05980 Genome accession   NZ_CP026038
Coordinates   1127079..1127768 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122079..1132768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS05945 (C2H97_05965) flgN 1122259..1122741 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C2H97_RS05950 (C2H97_05970) flgM 1122757..1123023 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H97_RS05955 (C2H97_05975) yvyF 1123104..1123523 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H97_RS05960 (C2H97_05980) comFC 1123597..1124319 (-) 723 WP_120027548.1 comF operon protein ComFC Machinery gene
  C2H97_RS05965 (C2H97_05985) comFB 1124283..1124579 (-) 297 WP_120027549.1 late competence protein ComFB -
  C2H97_RS05970 (C2H97_05990) comFA 1124639..1126030 (-) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  C2H97_RS05975 (C2H97_05995) fakBA 1126136..1126981 (-) 846 WP_038829896.1 DegV family protein -
  C2H97_RS05980 (C2H97_06000) degU 1127079..1127768 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H97_RS05985 (C2H97_06005) degS 1127851..1129008 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H97_RS05990 (C2H97_06010) yvyE 1129225..1129878 (+) 654 WP_003227979.1 YigZ family protein -
  C2H97_RS05995 (C2H97_06015) tagV 1129878..1131053 (+) 1176 WP_120027551.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C2H97_RS06000 (C2H97_06020) tagO 1131126..1132202 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=265767 C2H97_RS05980 WP_003219701.1 1127079..1127768(-) (degU) [Bacillus subtilis PY79 strain PK1_3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=265767 C2H97_RS05980 WP_003219701.1 1127079..1127768(-) (degU) [Bacillus subtilis PY79 strain PK1_3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment