Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C2H97_RS05960 Genome accession   NZ_CP026038
Coordinates   1123597..1124319 (-) Length   240 a.a.
NCBI ID   WP_120027548.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1118597..1129319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS05925 (C2H97_05945) fliW 1118736..1119167 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  C2H97_RS05930 (C2H97_05950) yviE 1119188..1119763 (-) 576 WP_015384781.1 DUF6470 family protein -
  C2H97_RS05935 (C2H97_05955) flgL 1119810..1120706 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C2H97_RS05940 (C2H97_05960) flgK 1120717..1122240 (-) 1524 WP_120027547.1 flagellar hook-associated protein FlgK -
  C2H97_RS05945 (C2H97_05965) flgN 1122259..1122741 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C2H97_RS05950 (C2H97_05970) flgM 1122757..1123023 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H97_RS05955 (C2H97_05975) yvyF 1123104..1123523 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H97_RS05960 (C2H97_05980) comFC 1123597..1124319 (-) 723 WP_120027548.1 comF operon protein ComFC Machinery gene
  C2H97_RS05965 (C2H97_05985) comFB 1124283..1124579 (-) 297 WP_120027549.1 late competence protein ComFB -
  C2H97_RS05970 (C2H97_05990) comFA 1124639..1126030 (-) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  C2H97_RS05975 (C2H97_05995) fakBA 1126136..1126981 (-) 846 WP_038829896.1 DegV family protein -
  C2H97_RS05980 (C2H97_06000) degU 1127079..1127768 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H97_RS05985 (C2H97_06005) degS 1127851..1129008 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27595.82 Da        Isoelectric Point: 9.1181

>NTDB_id=265765 C2H97_RS05960 WP_120027548.1 1123597..1124319(-) (comFC) [Bacillus subtilis PY79 strain PK1_3]
MSNEAGGDIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGYNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=265765 C2H97_RS05960 WP_120027548.1 1123597..1124319(-) (comFC) [Bacillus subtilis PY79 strain PK1_3]
ATGTCAAACGAAGCAGGAGGAGACATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATATAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment