Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C2H97_RS04040 Genome accession   NZ_CP026038
Coordinates   739227..739871 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 734227..744871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS04005 (C2H97_04015) mrpB 735419..735850 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  C2H97_RS04010 (C2H97_04020) mrpC 735850..736191 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C2H97_RS04015 (C2H97_04025) mrpD 736184..737665 (+) 1482 WP_124072774.1 Na+/H+ antiporter subunit D -
  C2H97_RS04020 (C2H97_04030) mrpE 737671..738147 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C2H97_RS04025 (C2H97_04035) mrpF 738147..738431 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C2H97_RS04030 (C2H97_04040) mnhG 738415..738789 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  C2H97_RS04035 (C2H97_04045) yuxO 738828..739208 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  C2H97_RS04040 (C2H97_04050) comA 739227..739871 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C2H97_RS04045 (C2H97_04055) comP 739952..742252 (-) 2301 WP_120028527.1 histidine kinase Regulator
  C2H97_RS04050 (C2H97_04060) comX 742264..742428 (-) 165 WP_015384519.1 competence pheromone ComX -
  C2H97_RS04055 (C2H97_04065) - 742441..743301 (-) 861 WP_064671628.1 polyprenyl synthetase family protein -
  C2H97_RS04060 (C2H97_04070) degQ 743486..743626 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C2H97_RS04065 - 743848..743973 (+) 126 WP_120028613.1 hypothetical protein -
  C2H97_RS04070 (C2H97_04075) - 744088..744456 (+) 369 WP_038828672.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=265760 C2H97_RS04040 WP_003220716.1 739227..739871(-) (comA) [Bacillus subtilis PY79 strain PK1_3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=265760 C2H97_RS04040 WP_003220716.1 739227..739871(-) (comA) [Bacillus subtilis PY79 strain PK1_3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment