Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C2H93_RS13900 Genome accession   NZ_CP026036
Coordinates   2713383..2714027 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2708383..2719027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS13865 (C2H93_13865) mrpB 2709575..2710006 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  C2H93_RS13870 (C2H93_13870) mrpC 2710006..2710347 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C2H93_RS13875 (C2H93_13875) mrpD 2710340..2711821 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  C2H93_RS13880 (C2H93_13880) mrpE 2711827..2712303 (+) 477 WP_120028526.1 Na+/H+ antiporter subunit E -
  C2H93_RS13885 (C2H93_13885) mrpF 2712303..2712587 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C2H93_RS13890 (C2H93_13890) mnhG 2712571..2712945 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  C2H93_RS13895 (C2H93_13895) yuxO 2712984..2713364 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  C2H93_RS13900 (C2H93_13900) comA 2713383..2714027 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C2H93_RS13905 (C2H93_13905) comP 2714108..2716426 (-) 2319 WP_161621287.1 sensor histidine kinase Regulator
  C2H93_RS13910 (C2H93_13910) comX 2716446..2716622 (-) 177 WP_041906074.1 competence pheromone ComX -
  C2H93_RS13915 (C2H93_13915) - 2716637..2717494 (-) 858 WP_309248341.1 polyprenyl synthetase family protein -
  C2H93_RS13920 (C2H93_13920) degQ 2717662..2717802 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C2H93_RS13925 - 2718024..2718086 (+) 63 Protein_2724 hypothetical protein -
  C2H93_RS13930 (C2H93_13925) - 2718265..2718633 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=265638 C2H93_RS13900 WP_003220716.1 2713383..2714027(-) (comA) [Bacillus subtilis strain PK5_16]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=265638 C2H93_RS13900 WP_003220716.1 2713383..2714027(-) (comA) [Bacillus subtilis strain PK5_16]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment