Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C2H96_RS20375 Genome accession   NZ_CP026035
Coordinates   3954290..3955093 (+) Length   267 a.a.
NCBI ID   WP_032726121.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3949290..3960093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS20355 (C2H96_20305) yqxC 3949400..3950245 (+) 846 WP_120028358.1 TlyA family RNA methyltransferase -
  C2H96_RS20360 (C2H96_20310) argR 3950343..3950792 (+) 450 WP_015384067.1 arginine repressor ArgR -
  C2H96_RS20365 (C2H96_20315) recN 3950829..3952559 (+) 1731 WP_120028357.1 DNA repair protein RecN Machinery gene
  C2H96_RS20370 (C2H96_20320) spoIVB 3952734..3954014 (+) 1281 WP_032726122.1 SpoIVB peptidase -
  C2H96_RS20375 (C2H96_20330) spo0A 3954290..3955093 (+) 804 WP_032726121.1 sporulation transcription factor Spo0A Regulator
  C2H96_RS20380 (C2H96_20335) yqiG 3955558..3956676 (-) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  C2H96_RS20385 - 3956749..3956901 (-) 153 WP_014480226.1 hypothetical protein -
  C2H96_RS20390 (C2H96_20340) - 3957209..3957505 (+) 297 WP_120028603.1 hypothetical protein -
  C2H96_RS20395 (C2H96_20345) yqiI 3957525..3958145 (+) 621 WP_120028356.1 N-acetylmuramoyl-L-alanine amidase -
  C2H96_RS20400 (C2H96_20350) glpQ 3958224..3958955 (+) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29677.16 Da        Isoelectric Point: 6.3909

>NTDB_id=265580 C2H96_RS20375 WP_032726121.1 3954290..3955093(+) (spo0A) [Bacillus subtilis strain PK5_68]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=265580 C2H96_RS20375 WP_032726121.1 3954290..3955093(+) (spo0A) [Bacillus subtilis strain PK5_68]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
TGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment