Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C2H96_RS20365 Genome accession   NZ_CP026035
Coordinates   3950829..3952559 (+) Length   576 a.a.
NCBI ID   WP_120028357.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3945829..3957559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS20340 (C2H96_20290) xseB 3946193..3946447 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  C2H96_RS20345 (C2H96_20295) ispA 3946437..3947327 (+) 891 WP_032726127.1 polyprenyl synthetase family protein -
  C2H96_RS20350 (C2H96_20300) dxs 3947502..3949403 (+) 1902 WP_003245985.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C2H96_RS20355 (C2H96_20305) yqxC 3949400..3950245 (+) 846 WP_120028358.1 TlyA family RNA methyltransferase -
  C2H96_RS20360 (C2H96_20310) argR 3950343..3950792 (+) 450 WP_015384067.1 arginine repressor ArgR -
  C2H96_RS20365 (C2H96_20315) recN 3950829..3952559 (+) 1731 WP_120028357.1 DNA repair protein RecN Machinery gene
  C2H96_RS20370 (C2H96_20320) spoIVB 3952734..3954014 (+) 1281 WP_032726122.1 SpoIVB peptidase -
  C2H96_RS20375 (C2H96_20330) spo0A 3954290..3955093 (+) 804 WP_032726121.1 sporulation transcription factor Spo0A Regulator
  C2H96_RS20380 (C2H96_20335) yqiG 3955558..3956676 (-) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  C2H96_RS20385 - 3956749..3956901 (-) 153 WP_014480226.1 hypothetical protein -
  C2H96_RS20390 (C2H96_20340) - 3957209..3957505 (+) 297 WP_120028603.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64562.45 Da        Isoelectric Point: 4.8397

>NTDB_id=265579 C2H96_RS20365 WP_120028357.1 3950829..3952559(+) (recN) [Bacillus subtilis strain PK5_68]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDKQLQEERQEISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQHVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=265579 C2H96_RS20365 WP_120028357.1 3950829..3952559(+) (recN) [Bacillus subtilis strain PK5_68]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCTGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGACAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGATACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATAAACAGCTCC
AAGAAGAGCGCCAGGAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCTTCAGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCTTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGTTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTCGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCACGTTCAGTTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTCTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.132

100

0.991

Multiple sequence alignment