Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   DK878_RS06260 Genome accession   NZ_CP031379
Coordinates   1251078..1251560 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246078..1256560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS06235 (DK878_06450) - 1247326..1248636 (-) 1311 WP_002938090.1 GntP family permease -
  DK878_RS06240 (DK878_06455) folK 1248687..1249175 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DK878_RS06245 (DK878_06460) folB 1249172..1249534 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  DK878_RS06250 (DK878_06465) folP 1249527..1250339 (-) 813 WP_002938084.1 dihydropteroate synthase -
  DK878_RS06255 (DK878_06470) folE 1250348..1250911 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  DK878_RS06260 (DK878_06475) mutX 1251078..1251560 (+) 483 WP_002938080.1 8-oxo-dGTP diphosphatase Machinery gene
  DK878_RS06265 (DK878_06480) - 1251609..1252286 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  DK878_RS06270 (DK878_06485) - 1252273..1253016 (-) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  DK878_RS06275 (DK878_06490) - 1253209..1253511 (+) 303 WP_002938072.1 hypothetical protein -
  DK878_RS06280 (DK878_06495) - 1253532..1253798 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  DK878_RS06285 (DK878_06500) pheT 1253853..1256252 (-) 2400 WP_002938067.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=265554 DK878_RS06260 WP_002938080.1 1251078..1251560(+) (mutX) [Streptococcus suis strain ISU2660]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=265554 DK878_RS06260 WP_002938080.1 1251078..1251560(+) (mutX) [Streptococcus suis strain ISU2660]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment