Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   C2H96_RS13320 Genome accession   NZ_CP026035
Coordinates   2605049..2606194 (-) Length   381 a.a.
NCBI ID   WP_021480843.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2600049..2611194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS13285 (C2H96_13210) - 2600612..2601172 (-) 561 WP_015714897.1 hypothetical protein -
  C2H96_RS13290 (C2H96_13215) - 2601165..2601812 (-) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  C2H96_RS13295 (C2H96_13220) - 2601815..2602612 (-) 798 WP_231573542.1 hypothetical protein -
  C2H96_RS13300 (C2H96_13225) - 2602622..2603296 (-) 675 WP_015714894.1 hypothetical protein -
  C2H96_RS13305 (C2H96_13230) - 2603283..2604071 (-) 789 WP_015714893.1 membrane protein -
  C2H96_RS13310 (C2H96_13235) - 2604220..2604699 (-) 480 WP_015714892.1 hypothetical protein -
  C2H96_RS13315 (C2H96_13240) phrF 2604946..2605065 (-) 120 WP_085185514.1 phosphatase RapF inhibitor PhrF Regulator
  C2H96_RS13320 (C2H96_13245) rapF 2605049..2606194 (-) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  C2H96_RS13325 (C2H96_13255) ywhK 2606424..2607779 (+) 1356 WP_038829813.1 YncE family protein -
  C2H96_RS13330 (C2H96_13260) ywhL 2607818..2609194 (+) 1377 WP_120027591.1 YncE family protein -
  C2H96_RS13335 (C2H96_13265) albG 2609200..2609901 (-) 702 WP_120027590.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  C2H96_RS13340 (C2H96_13270) albF 2609898..2611178 (-) 1281 WP_249847924.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45603.10 Da        Isoelectric Point: 5.1493

>NTDB_id=265545 C2H96_RS13320 WP_021480843.1 2605049..2606194(-) (rapF) [Bacillus subtilis strain PK5_68]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFNFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=265545 C2H96_RS13320 WP_021480843.1 2605049..2606194(-) (rapF) [Bacillus subtilis strain PK5_68]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTAATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

99.213

100

0.992
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment