Detailed information NTG0265519

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: C2H96_RS05060
• Genome accession: NZ_CP026035
• Coordinates: 1025038..1025991 (-)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain PK5_68
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1020038..1030991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2H96_RS05030 (C2H96_04945)	appD	1020161..1021147 (-)	987	WP_015383344.1	oligopeptide ABC transporter ATP-binding protein AppD	-
C2H96_RS05035 (C2H96_04950)	yjaZ	1021338..1022123 (-)	786	WP_213419345.1	DUF2268 domain-containing protein	-
C2H96_RS05040 (C2H96_04955)	fabF	1022199..1023440 (-)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
C2H96_RS05045 (C2H96_04960)	fabH	1023463..1024401 (-)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
C2H96_RS05050 (C2H96_04965)	yjzB	1024566..1024802 (+)	237	WP_072173825.1	spore coat protein YjzB	-
C2H96_RS05055 (C2H96_04970)	comZ	1024832..1025023 (-)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
C2H96_RS05060 (C2H96_04975)	med	1025038..1025991 (-)	954	WP_014476425.1	transcriptional regulator Med	Regulator
C2H96_RS05065 (C2H96_04980)	-	1026082..1026639 (-)	558	WP_021479559.1	hypothetical protein	-
C2H96_RS05070 (C2H96_04985)	-	1026721..1027455 (-)	735	WP_003245223.1	hypothetical protein	-
C2H96_RS05075 (C2H96_04990)	yjzD	1027704..1027889 (+)	186	WP_003245236.1	DUF2929 domain-containing protein	-
C2H96_RS05080 (C2H96_04995)	yjzC	1027936..1028115 (-)	180	WP_003245356.1	YjzC family protein	-
C2H96_RS05085 (C2H96_05000)	argF	1028201..1029160 (-)	960	WP_014476421.1	ornithine carbamoyltransferase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=265519 C2H96_RS05060 WP_014476425.1 1025038..1025991(-) (med) [Bacillus subtilis strain PK5_68]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=265519 C2H96_RS05060 WP_014476425.1 1025038..1025991(-) (med) [Bacillus subtilis strain PK5_68]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGATGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAACAAAGG
CACCCTTGAGGGCGGCGACCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGGACATTCAGCCCGCTCGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997