Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DK237_RS05440 Genome accession   NZ_CP031377
Coordinates   1067189..1069174 (-) Length   661 a.a.
NCBI ID   WP_002935167.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2614     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062189..1074174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK237_RS11000 - 1064298..1065035 (-) 738 WP_029743111.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  DK237_RS05430 (DK237_05575) - 1065222..1065320 (-) 99 Protein_1043 UvrB/UvrC motif-containing protein -
  DK237_RS05435 (DK237_05580) - 1065363..1067174 (-) 1812 WP_013730377.1 DUF2971 domain-containing protein -
  DK237_RS05440 (DK237_05585) uvrB 1067189..1069174 (-) 1986 WP_002935167.1 excinuclease ABC subunit UvrB Machinery gene
  DK237_RS05445 (DK237_05590) - 1069171..1069830 (-) 660 WP_002935168.1 hypothetical protein -
  DK237_RS05450 (DK237_05595) - 1070031..1072229 (+) 2199 WP_013730378.1 ABC transporter substrate-binding protein/permease -
  DK237_RS05455 (DK237_05600) - 1072229..1072969 (+) 741 WP_013730379.1 amino acid ABC transporter ATP-binding protein -
  DK237_RS05460 (DK237_05605) - 1073025..1073516 (-) 492 WP_013730380.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75624.63 Da        Isoelectric Point: 4.5976

>NTDB_id=265451 DK237_RS05440 WP_002935167.1 1067189..1069174(-) (uvrB) [Streptococcus suis strain ISU2614]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAA
EVLDFELAAQIRDMVIELKNM

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=265451 DK237_RS05440 WP_002935167.1 1067189..1069174(-) (uvrB) [Streptococcus suis strain ISU2614]
ATGATAAATCGAAATACTGAAAACCAATTTAAACTTGTTTCTAAATACTCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAACATCGAGGGGGGCGAAAAAGCTCAGATTCTCATGGGGGCGACTGGTACGGGTAAGACCTACACCA
TGAGTCAGGTCATTGCCCGTGTCAATAAGCCCACTCTTGTCATCGCCCACAACAAGACTCTAGCTGGTCAGCTCTACAGC
GAGTTCAAGGAATTCTTCCCAGAAAATGCGGTCGAATACTTCGTATCTTACTATGATTACTACCAGCCAGAAGCCTATGT
ACCGTCTAGCGATACCTATATCGAGAAGGACAGTTCGGTCAATGATGAGATTGACAAACTTCGTCATTCAGCGACTTCAG
CACTTCTCGAACGAAATGATGTCATCGTTGTGGCTTCGGTTTCCTGTATCTACGGTTTGGGATCGCCCAAGGAATATTCA
GATAGCGTGGTCAGCCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTGCTCAACTCTCTGGTAGATATTCAGTTTGA
GCGCAACGACATCGACTTCCAACGGGGGCGTTTCCGTGTACGTGGAGATGTGGTGGAGATTTTCCCAGCTTCCCGTGATG
AACACGCCTTTCGTGTGGAGTTTTTTGGTGATGAAATCGACCGCATTCGTGAGATTGAAAGCCTGACAGGGAAGGTTTTG
GGCGATGTGGATCACTTGGCCATTTTCCCTGCCACCCATTTCGTGACCAACGATGATCACATGGAAACGGCTATTGCCAA
GATTCAGGCGGAACTGGAAGAGCAGCTCAAGATCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GGACCGACTACGACATCGAGATGCTTCGAGAAATGGGCTACACCAACGGAGTTGAGAACTATTCACGACATATGGACGGG
CGAAGCGAGGGCGAGCCTCCCTACACCCTGCTGGACTTTTTCCCTGAAGATTACCTGATTATGATTGACGAGAGTCATAT
GACCATGGGGCAGATTAAGGGAATGTACAATGGTGACCGCTCACGCAAGGAGATGTTGGTCAACTATGGTTTCCGCCTCC
CGAGTGCACTGGACAACCGTCCGCTGCGCAGGGAAGAATTTGAGAGCCATGTCCACCAGATTGTCTATGTATCTGCGACG
CCGGGTGACTATGAAATGGAGCAGACCGATACCGTTGTCGAGCAGATTATTCGGCCGACAGGGCTTTTGGATCCAGAGGT
GGAAGTCCGTCCAACCATGGGCCAAATGGACGACCTCTTGGGCGAAATCAATGCCCGTGTTGAGAAGGGTGAGCGGACCT
TTATCACTACCCTGACCAAGAAAATGGCAGAGGACTTGACCGACTACCTGAAAGAAATGGGCGTCAAGGTCAAGTATATG
CACTCGGACATCAAGACCTTGGAGCGTACGGAGATTATCCGTGATCTTCGCTTGGGTGTCTTTGATGTTTTGATAGGGAT
TAACCTGCTTCGTGAAGGGATTGACGTGCCAGAAGTTAGTCTAGTCGCTATCTTAGACGCAGACAAGGAGGGCTTCCTCC
GTAATGAACGGGGGCTCATCCAGACAATCGGTCGAGCGGCTCGTAACTCTGAAGGTCATGTGATTATGTATGCGGACAAG
GTCACCGAGTCCATGCGGAAGGCCATGGAAGAAACAGCCCGCCGCCGTCAAATCCAGATGGCTTATAATGAAGAACATGG
CATCATTCCACAAACTATTAAGAAAGAAATCCGTGACCTGATAAGCGTGACTAAGGCTGTCACTCAGGACAAGGAAGAAG
TAGTGGACTTCAATGCTCTTAATAAAGATGAACGCAAGGCTATGATCAAGAAACTGGAAGGTCAGATGCAGGAAGCAGCA
GAAGTGCTTGACTTTGAACTGGCAGCTCAAATTAGGGATATGGTCATTGAGTTGAAGAATATGTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(626-660)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

Type III restriction enzyme, res subunit (ResIII)

(20-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

90.923

100

0.909
  uvrB Streptococcus pneumoniae D39

90.923

100

0.909
  uvrB Streptococcus pneumoniae TIGR4

90.772

100

0.908

Multiple sequence alignment