Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C2H94_RS05325 Genome accession   NZ_CP026034
Coordinates   956949..957593 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 951949..962593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS05290 (C2H94_05255) mrpB 953141..953572 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  C2H94_RS05295 (C2H94_05260) mrpC 953572..953913 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C2H94_RS05300 (C2H94_05265) mrpD 953906..955387 (+) 1482 WP_103804331.1 Na+/H+ antiporter subunit D -
  C2H94_RS05305 (C2H94_05270) mrpE 955393..955869 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C2H94_RS05310 (C2H94_05275) mrpF 955869..956153 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C2H94_RS05315 (C2H94_05280) mnhG 956137..956511 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  C2H94_RS05320 (C2H94_05285) yuxO 956550..956930 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  C2H94_RS05325 (C2H94_05290) comA 956949..957593 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C2H94_RS05330 (C2H94_05295) - 957674..959970 (-) 2297 Protein_1036 histidine kinase -
  C2H94_RS05335 (C2H94_05300) comX 959978..960139 (-) 162 WP_049140565.1 competence pheromone ComX -
  C2H94_RS05340 (C2H94_05305) - 960154..961014 (-) 861 WP_032677058.1 polyprenyl synthetase family protein -
  C2H94_RS05345 (C2H94_05310) degQ 961199..961339 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C2H94_RS05350 - 961561..961623 (+) 63 Protein_1040 hypothetical protein -
  C2H94_RS05355 (C2H94_05315) - 961802..962170 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=265450 C2H94_RS05325 WP_003220716.1 956949..957593(-) (comA) [Bacillus subtilis strain PK5_52]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=265450 C2H94_RS05325 WP_003220716.1 956949..957593(-) (comA) [Bacillus subtilis strain PK5_52]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment