Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DXE50_RS08955 Genome accession   NZ_CP031353
Coordinates   1438982..1439719 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O145 strain RM9154-C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433982..1444719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE50_RS08925 (DXE50_09355) yfiL 1434140..1434505 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  DXE50_RS08930 (DXE50_09360) aroF 1434715..1435785 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DXE50_RS08935 (DXE50_09365) tyrA 1435796..1436917 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DXE50_RS08940 (DXE50_09370) pheA 1436960..1438120 (-) 1161 WP_150332294.1 bifunctional chorismate mutase/prephenate dehydratase -
  DXE50_RS08945 (DXE50_09375) pheL 1438219..1438266 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DXE50_RS08950 (DXE50_09380) raiA 1438370..1438711 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DXE50_RS08955 (DXE50_09385) comL 1438982..1439719 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DXE50_RS08960 (DXE50_09390) rluD 1439854..1440834 (+) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DXE50_RS08965 (DXE50_09395) yfiH 1440831..1441562 (+) 732 WP_000040153.1 purine nucleoside phosphorylase YfiH -
  DXE50_RS08970 (DXE50_09400) clpC 1441692..1444265 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=265258 DXE50_RS08955 WP_000197686.1 1438982..1439719(-) (comL) [Escherichia coli O145 strain RM9154-C1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=265258 DXE50_RS08955 WP_000197686.1 1438982..1439719(-) (comL) [Escherichia coli O145 strain RM9154-C1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376