Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DXE51_RS16700 Genome accession   NZ_CP031349
Coordinates   3294346..3295083 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O145 strain RM9467-C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3289346..3300083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE51_RS16685 (DXE51_17205) clpC 3289800..3292373 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DXE51_RS16690 (DXE51_17210) yfiH 3292503..3293234 (-) 732 WP_000040153.1 purine nucleoside phosphorylase YfiH -
  DXE51_RS16695 (DXE51_17215) rluD 3293231..3294211 (-) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DXE51_RS16700 (DXE51_17220) comL 3294346..3295083 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DXE51_RS16705 (DXE51_17225) raiA 3295354..3295695 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DXE51_RS16710 (DXE51_17230) pheL 3295799..3295846 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DXE51_RS16715 (DXE51_17235) pheA 3295945..3297105 (+) 1161 WP_000200122.1 bifunctional chorismate mutase/prephenate dehydratase -
  DXE51_RS16720 (DXE51_17240) tyrA 3297148..3298269 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DXE51_RS16725 (DXE51_17245) aroF 3298280..3299350 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DXE51_RS16730 (DXE51_17250) yfiL 3299560..3299925 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=265201 DXE51_RS16700 WP_000197686.1 3294346..3295083(+) (comL) [Escherichia coli O145 strain RM9467-C1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=265201 DXE51_RS16700 WP_000197686.1 3294346..3295083(+) (comL) [Escherichia coli O145 strain RM9467-C1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment