Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SPYM_RS09185 Genome accession   NC_009332
Coordinates   1825636..1826742 (+) Length   368 a.a.
NCBI ID   WP_011889258.1    Uniprot ID   A2RH21
Organism   Streptococcus pyogenes str. Manfredo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1820636..1831742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS09165 (SpyM51824) hasA 1821314..1822573 (+) 1260 WP_002982042.1 hyaluronan synthase HasA -
  SPYM_RS09170 (SpyM51825) hasB 1822609..1823817 (+) 1209 WP_011889255.1 UDP-glucose 6-dehydrogenase HasB -
  SPYM_RS09175 (SpyM51826) hasC 1823999..1824913 (+) 915 WP_011889256.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  SPYM_RS09180 (SpyM51827) yaaA 1825221..1825634 (+) 414 WP_011889257.1 S4 domain-containing protein YaaA -
  SPYM_RS09185 (SpyM51828) recF 1825636..1826742 (+) 1107 WP_011889258.1 DNA replication/repair protein RecF Machinery gene
  SPYM_RS09190 (SpyM51829) - 1826798..1827661 (-) 864 WP_002991450.1 GRP family sugar transporter -
  SPYM_RS09195 (SpyM51830) guaB 1827864..1829345 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  SPYM_RS09200 (SpyM51831) trpS 1829653..1830675 (-) 1023 WP_011889259.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41776.66 Da        Isoelectric Point: 7.5270

>NTDB_id=26520 SPYM_RS09185 WP_011889258.1 1825636..1826742(+) (recF) [Streptococcus pyogenes str. Manfredo]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIHIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=26520 SPYM_RS09185 WP_011889258.1 1825636..1826742(+) (recF) [Streptococcus pyogenes str. Manfredo]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTGAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCATATTTTCCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RH21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

47.159

95.652

0.451

Multiple sequence alignment