Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   PEPE_RS04285 Genome accession   NC_008525
Coordinates   881388..882650 (+) Length   420 a.a.
NCBI ID   WP_011673318.1    Uniprot ID   A0A833T1A3
Organism   Pediococcus pentosaceus ATCC 25745     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 876388..887650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PEPE_RS04260 (PEPE_0878) tsf 877244..878122 (+) 879 WP_002833606.1 translation elongation factor Ts -
  PEPE_RS04265 (PEPE_0879) pyrH 878276..879001 (+) 726 WP_002833607.1 UMP kinase -
  PEPE_RS04270 (PEPE_0880) frr 879001..879561 (+) 561 WP_002833608.1 ribosome recycling factor -
  PEPE_RS04275 (PEPE_0881) - 879819..880568 (+) 750 WP_011673316.1 isoprenyl transferase -
  PEPE_RS04280 (PEPE_0882) - 880579..881364 (+) 786 WP_041527001.1 phosphatidate cytidylyltransferase -
  PEPE_RS04285 (PEPE_0883) eeP 881388..882650 (+) 1263 WP_011673318.1 RIP metalloprotease RseP Regulator
  PEPE_RS04290 (PEPE_0884) - 882678..884393 (+) 1716 WP_011673319.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46381.00 Da        Isoelectric Point: 9.6829

>NTDB_id=26502 PEPE_RS04285 WP_011673318.1 881388..882650(+) (eeP) [Pediococcus pentosaceus ATCC 25745]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQIKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNFVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=26502 PEPE_RS04285 WP_011673318.1 881388..882650(+) (eeP) [Pediococcus pentosaceus ATCC 25745]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAATAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCTACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTAGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATTTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-406)

PDZ domain (PDZ_6)

(208-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A833T1A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

47.877

100

0.483
  eeP Streptococcus thermophilus LMG 18311

47.877

100

0.483

Multiple sequence alignment