Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DXE54_RS16480 Genome accession   NZ_CP031343
Coordinates   3251489..3252226 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O145 strain RM10425-C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3246489..3257226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE54_RS16465 (DXE54_16990) clpC 3246943..3249516 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DXE54_RS16470 (DXE54_16995) yfiH 3249646..3250377 (-) 732 WP_000040153.1 purine nucleoside phosphorylase YfiH -
  DXE54_RS16475 (DXE54_17000) rluD 3250374..3251354 (-) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DXE54_RS16480 (DXE54_17005) comL 3251489..3252226 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DXE54_RS16485 (DXE54_17010) raiA 3252497..3252838 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DXE54_RS16490 (DXE54_17015) pheL 3252942..3252989 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DXE54_RS16495 (DXE54_17020) pheA 3253088..3254248 (+) 1161 WP_000200122.1 bifunctional chorismate mutase/prephenate dehydratase -
  DXE54_RS16500 (DXE54_17025) tyrA 3254291..3255412 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DXE54_RS16505 (DXE54_17030) aroF 3255423..3256493 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DXE54_RS16510 (DXE54_17035) yfiL 3256703..3257068 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=264971 DXE54_RS16480 WP_000197686.1 3251489..3252226(+) (comL) [Escherichia coli O145 strain RM10425-C1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=264971 DXE54_RS16480 WP_000197686.1 3251489..3252226(+) (comL) [Escherichia coli O145 strain RM10425-C1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment