Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BS11774_RS07910 Genome accession   NZ_CP026010
Coordinates   1491739..1492188 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain ATCC 11774     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1486739..1497188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS07875 (BS11774_07840) yckA 1486890..1487570 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  BS11774_RS07880 (BS11774_07845) yckB 1487580..1488443 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  BS11774_RS07885 - 1488605..1488802 (+) 198 WP_119122841.1 hypothetical protein -
  BS11774_RS07890 (BS11774_07850) yckC 1488821..1489276 (+) 456 WP_003246356.1 RDD family protein -
  BS11774_RS07895 (BS11774_07855) yckD 1489358..1489690 (+) 333 WP_003246247.1 YckD family protein -
  BS11774_RS07900 (BS11774_07860) bglC 1489844..1491277 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  BS11774_RS07905 (BS11774_07865) nin/comJ 1491314..1491712 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  BS11774_RS07910 (BS11774_07870) nucA/comI 1491739..1492188 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  BS11774_RS07915 (BS11774_07875) tlpC 1492356..1494074 (-) 1719 WP_128473581.1 methyl-accepting chemotaxis protein TlpC -
  BS11774_RS07920 (BS11774_07880) hxlB 1494185..1494742 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  BS11774_RS07925 (BS11774_07885) hxlA 1494748..1495380 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  BS11774_RS07930 (BS11774_07890) hxlR 1495613..1495975 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=264970 BS11774_RS07910 WP_003246436.1 1491739..1492188(-) (nucA/comI) [Bacillus subtilis strain ATCC 11774]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=264970 BS11774_RS07910 WP_003246436.1 1491739..1492188(-) (nucA/comI) [Bacillus subtilis strain ATCC 11774]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment