Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | CYK57_RS07150 | Genome accession | NZ_CP026009 |
| Coordinates | 1567862..1568410 (-) | Length | 182 a.a. |
| NCBI ID | WP_011848557.1 | Uniprot ID | A3N1S3 |
| Organism | Actinobacillus pleuropneumoniae strain App6 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1562862..1573410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYK57_RS07135 (CYK57_01456) | - | 1563344..1563865 (+) | 522 | WP_193327846.1 | SprT family zinc-dependent metalloprotease | - |
| CYK57_RS07140 (CYK57_01457) | - | 1563970..1565256 (+) | 1287 | WP_005615681.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CYK57_RS07145 (CYK57_01458) | - | 1565448..1567787 (-) | 2340 | WP_011848556.1 | Tex family protein | - |
| CYK57_RS07150 (CYK57_01459) | pilF | 1567862..1568410 (-) | 549 | WP_011848557.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| CYK57_RS07155 (CYK57_01460) | - | 1568464..1569645 (-) | 1182 | WP_009875290.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| CYK57_RS07180 (CYK57_01465) | gltX | 1570549..1571988 (+) | 1440 | WP_009875289.1 | glutamate--tRNA ligase | - |
| CYK57_RS07190 (CYK57_01467) | yefM | 1572326..1572577 (+) | 252 | WP_005605062.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| CYK57_RS07195 (CYK57_01468) | - | 1572574..1572834 (+) | 261 | WP_009875288.1 | Txe/YoeB family addiction module toxin | - |
| CYK57_RS07200 (CYK57_01469) | - | 1572991..1573158 (-) | 168 | WP_009875287.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20671.35 Da Isoelectric Point: 6.9479
>NTDB_id=264933 CYK57_RS07150 WP_011848557.1 1567862..1568410(-) (pilF) [Actinobacillus pleuropneumoniae strain App6]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=264933 CYK57_RS07150 WP_011848557.1 1567862..1568410(-) (pilF) [Actinobacillus pleuropneumoniae strain App6]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
67.021 |
100 |
0.692 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |