Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DV178_RS11210 Genome accession   NZ_CP031335
Coordinates   1876104..1876781 (-) Length   225 a.a.
NCBI ID   WP_002220931.1    Uniprot ID   A1KU78
Organism   Neisseria meningitidis strain M25964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871104..1881781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS11195 hflX 1872690..1873868 (-) 1179 WP_002220933.1 GTPase HflX -
  DV178_RS11200 - 1873873..1875153 (-) 1281 WP_002220932.1 CAP domain-containing protein -
  DV178_RS13925 - 1875155..1875283 (+) 129 WP_009347251.1 hypothetical protein -
  DV178_RS11205 - 1875306..1876031 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  DV178_RS11210 ysxA/radC 1876104..1876781 (-) 678 WP_002220931.1 RadC family protein Machinery gene
  DV178_RS13930 - 1876808..1876930 (+) 123 WP_255265604.1 hypothetical protein -
  DV178_RS11215 gshA 1876904..1878253 (-) 1350 WP_002220930.1 glutamate--cysteine ligase -
  DV178_RS11220 leuC 1878513..1879922 (+) 1410 WP_002213443.1 3-isopropylmalate dehydratase large subunit -
  DV178_RS11225 - 1880019..1880285 (+) 267 WP_115432365.1 hypothetical protein -
  DV178_RS11230 leuD 1880347..1880988 (+) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24992.80 Da        Isoelectric Point: 5.7262

>NTDB_id=264778 DV178_RS11210 WP_002220931.1 1876104..1876781(-) (ysxA/radC) [Neisseria meningitidis strain M25964]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=264778 DV178_RS11210 WP_002220931.1 1876104..1876781(-) (ysxA/radC) [Neisseria meningitidis strain M25964]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTTGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCCGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KU78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378