Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DV166_RS11500 Genome accession   NZ_CP031334
Coordinates   1934336..1935013 (-) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis strain M22293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929336..1940013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS11485 hflX 1930922..1932100 (-) 1179 WP_002219225.1 GTPase HflX -
  DV166_RS11490 - 1932105..1933385 (-) 1281 WP_002219224.1 CAP domain-containing protein -
  DV166_RS14720 - 1933387..1933515 (+) 129 WP_009347251.1 hypothetical protein -
  DV166_RS11495 - 1933538..1934263 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  DV166_RS11500 ysxA/radC 1934336..1935013 (-) 678 WP_002213447.1 DNA repair protein RadC Machinery gene
  DV166_RS14725 - 1935040..1935162 (+) 123 WP_255294323.1 hypothetical protein -
  DV166_RS11505 gshA 1935136..1936485 (-) 1350 WP_002223737.1 glutamate--cysteine ligase -
  DV166_RS11510 leuC 1936745..1938154 (+) 1410 WP_002224507.1 3-isopropylmalate dehydratase large subunit -
  DV166_RS11515 - 1938251..1938505 (+) 255 WP_002213442.1 hypothetical protein -
  DV166_RS11520 leuD 1938567..1939208 (+) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  DV166_RS11525 - 1939273..1939734 (+) 462 WP_002237965.1 YhcH/YjgK/YiaL family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=264708 DV166_RS11500 WP_002213447.1 1934336..1935013(-) (ysxA/radC) [Neisseria meningitidis strain M22293]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=264708 DV166_RS11500 WP_002213447.1 1934336..1935013(-) (ysxA/radC) [Neisseria meningitidis strain M22293]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378