Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   C0W57_RS19965 Genome accession   NZ_CP025939
Coordinates   3887065..3887463 (-) Length   132 a.a.
NCBI ID   WP_029973909.1    Uniprot ID   -
Organism   Bacillus velezensis strain 10075     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3882065..3892463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0W57_RS19940 (C0W57_19940) - 3882237..3883439 (+) 1203 WP_014416870.1 GTP-binding protein -
  C0W57_RS19945 (C0W57_19945) - 3883504..3884640 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  C0W57_RS19950 (C0W57_19950) - 3884655..3885089 (+) 435 WP_014416871.1 RDD family protein -
  C0W57_RS19955 (C0W57_19955) - 3885206..3885484 (+) 279 WP_263612330.1 YckD family protein -
  C0W57_RS19960 (C0W57_19960) - 3885588..3887024 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  C0W57_RS19965 (C0W57_19965) nin/comJ 3887065..3887463 (-) 399 WP_029973909.1 competence protein ComJ Regulator
  C0W57_RS19970 (C0W57_19970) nucA/comI 3887484..3887921 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C0W57_RS19975 (C0W57_19975) hxlB 3888252..3888809 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  C0W57_RS19980 (C0W57_19980) hxlA 3888806..3889441 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  C0W57_RS19985 (C0W57_19985) - 3889673..3890035 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14877.90 Da        Isoelectric Point: 4.7846

>NTDB_id=264661 C0W57_RS19965 WP_029973909.1 3887065..3887463(-) (nin/comJ) [Bacillus velezensis strain 10075]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMAKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=264661 C0W57_RS19965 WP_029973909.1 3887065..3887463(-) (nin/comJ) [Bacillus velezensis strain 10075]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGGCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment