Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DV143_RS01580 Genome accession   NZ_CP031333
Coordinates   237850..238527 (+) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain M18727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232850..243527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS01560 leuD 233655..234296 (-) 642 WP_002222556.1 3-isopropylmalate dehydratase small subunit -
  DV143_RS01565 - 234358..234612 (-) 255 WP_002213442.1 hypothetical protein -
  DV143_RS01570 leuC 234709..236118 (-) 1410 WP_002222555.1 3-isopropylmalate dehydratase large subunit -
  DV143_RS01575 gshA 236378..237727 (+) 1350 WP_002213445.1 glutamate--cysteine ligase -
  DV143_RS01580 ysxA/radC 237850..238527 (+) 678 WP_002222553.1 DNA repair protein RadC Machinery gene
  DV143_RS01585 - 238600..239325 (+) 726 WP_002222552.1 epoxyqueuosine reductase QueH -
  DV143_RS14500 - 239348..239476 (-) 129 WP_009347251.1 hypothetical protein -
  DV143_RS01590 - 239478..240758 (+) 1281 WP_002240540.1 CAP domain-containing protein -
  DV143_RS01595 hflX 240763..241941 (+) 1179 WP_002240539.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=264589 DV143_RS01580 WP_002222553.1 237850..238527(+) (ysxA/radC) [Neisseria meningitidis strain M18727]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=264589 DV143_RS01580 WP_002222553.1 237850..238527(+) (ysxA/radC) [Neisseria meningitidis strain M18727]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment