Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DV179_RS03920 Genome accession   NZ_CP031331
Coordinates   672661..673338 (+) Length   225 a.a.
NCBI ID   WP_002220931.1    Uniprot ID   A1KU78
Organism   Neisseria meningitidis strain M26263     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 667661..678338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV179_RS03900 leuD 668466..669107 (-) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  DV179_RS03905 - 669169..669423 (-) 255 WP_002213442.1 hypothetical protein -
  DV179_RS03910 leuC 669520..670929 (-) 1410 WP_002213443.1 3-isopropylmalate dehydratase large subunit -
  DV179_RS03915 gshA 671189..672538 (+) 1350 WP_002220930.1 glutamate--cysteine ligase -
  DV179_RS03920 ysxA/radC 672661..673338 (+) 678 WP_002220931.1 DNA repair protein RadC Machinery gene
  DV179_RS03925 - 673411..674136 (+) 726 WP_024465128.1 epoxyqueuosine reductase QueH -
  DV179_RS14515 - 674159..674287 (-) 129 WP_009347251.1 hypothetical protein -
  DV179_RS03930 - 674289..675569 (+) 1281 WP_002220932.1 CAP domain-containing protein -
  DV179_RS03935 hflX 675574..676752 (+) 1179 WP_002220933.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24992.80 Da        Isoelectric Point: 5.7262

>NTDB_id=264530 DV179_RS03920 WP_002220931.1 672661..673338(+) (ysxA/radC) [Neisseria meningitidis strain M26263]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=264530 DV179_RS03920 WP_002220931.1 672661..673338(+) (ysxA/radC) [Neisseria meningitidis strain M26263]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTTGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCCGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KU78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378