Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DV163_RS02620 Genome accession   NZ_CP031330
Coordinates   465261..465938 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain M21955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460261..470938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS02605 hflX 461847..463025 (-) 1179 WP_002222550.1 GTPase HflX -
  DV163_RS02610 - 463030..464310 (-) 1281 WP_002225276.1 CAP domain-containing protein -
  DV163_RS14135 - 464312..464440 (+) 129 WP_009347251.1 hypothetical protein -
  DV163_RS02615 - 464463..465188 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  DV163_RS02620 ysxA/radC 465261..465938 (-) 678 WP_002222553.1 DNA repair protein RadC Machinery gene
  DV163_RS02625 gshA 466061..467410 (-) 1350 WP_002213445.1 glutamate--cysteine ligase -
  DV163_RS02630 leuC 467670..469079 (+) 1410 WP_002222555.1 3-isopropylmalate dehydratase large subunit -
  DV163_RS02635 - 469176..469430 (+) 255 WP_002213442.1 hypothetical protein -
  DV163_RS02640 leuD 469492..470133 (+) 642 WP_002222556.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=264455 DV163_RS02620 WP_002222553.1 465261..465938(-) (ysxA/radC) [Neisseria meningitidis strain M21955]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=264455 DV163_RS02620 WP_002222553.1 465261..465938(-) (ysxA/radC) [Neisseria meningitidis strain M21955]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCTAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTAGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCCATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378