Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV167_RS04810 Genome accession   NZ_CP031329
Coordinates   831060..831656 (-) Length   198 a.a.
NCBI ID   WP_002251252.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 826060..836656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS04785 dut 827175..827627 (-) 453 WP_002236894.1 dUTP diphosphatase -
  DV167_RS04790 - 827775..828200 (+) 426 Protein_784 AzlC family ABC transporter permease -
  DV167_RS04805 pilL 830558..831055 (-) 498 WP_002251253.1 PilX family type IV pilin Machinery gene
  DV167_RS04810 pilK 831060..831656 (-) 597 WP_002251252.1 pilus assembly protein Machinery gene
  DV167_RS04815 pilJ 831635..832597 (-) 963 WP_002251251.1 PilW family protein Machinery gene
  DV167_RS04820 pilV 832594..833205 (-) 612 WP_002251250.1 type IV pilus modification protein PilV Regulator
  DV167_RS04825 pilH 833235..833900 (-) 666 WP_002251249.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV167_RS04830 dnaB 834209..835615 (-) 1407 WP_002213843.1 replicative DNA helicase -
  DV167_RS04840 - 835778..836365 (+) 588 WP_002242525.1 superoxide dismutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21824.82 Da        Isoelectric Point: 6.3951

>NTDB_id=264392 DV167_RS04810 WP_002251252.1 831060..831656(-) (pilK) [Neisseria meningitidis strain M22425]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNNTGNEEAFDNIVVQGKPTVEAVKRPCPANSTDLCIDKKGMEYKKGTRSVSKMPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=264392 DV167_RS04810 WP_002251252.1 831060..831656(-) (pilK) [Neisseria meningitidis strain M22425]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTCCTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.889

Multiple sequence alignment