Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PA14_RS23965 | Genome accession | NC_008463 |
| Coordinates | 5237206..5238078 (+) | Length | 290 a.a. |
| NCBI ID | WP_003141356.1 | Uniprot ID | A0A0H2ZGZ1 |
| Organism | Pseudomonas aeruginosa UCBPP-PA14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5232206..5243078
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PA14_RS23945 (PA14_58720) | - | 5232749..5233447 (-) | 699 | WP_016254081.1 | hypothetical protein | - |
| PA14_RS30890 (PA14_58730) | - | 5233511..5234050 (-) | 540 | WP_003141352.1 | pilin | - |
| PA14_RS23955 (PA14_58750) | pilB | 5234279..5235982 (+) | 1704 | WP_003141354.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PA14_RS23960 (PA14_58760) | pilC | 5235986..5237203 (+) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| PA14_RS23965 (PA14_58770) | pilD | 5237206..5238078 (+) | 873 | WP_003141356.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PA14_RS23970 (PA14_58780) | coaE | 5238075..5238686 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PA14_RS23975 (PA14_58790) | yacG | 5238683..5238883 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PA14_RS23980 (PA14_58800) | - | 5238920..5239129 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PA14_RS23985 (PA14_58810) | - | 5239235..5239924 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PA14_RS23990 (PA14_58820) | - | 5239921..5240391 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| PA14_RS23995 (PA14_58830) | - | 5240388..5240813 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PA14_RS24000 (PA14_58840) | - | 5240946..5241575 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PA14_RS24005 (PA14_58850) | - | 5241572..5242021 (+) | 450 | WP_003141357.1 | MOSC domain-containing protein | - |
| PA14_RS24010 (PA14_58860) | - | 5242047..5242217 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31813.85 Da Isoelectric Point: 7.7068
>NTDB_id=26434 PA14_RS23965 WP_003141356.1 5237206..5238078(+) (pilD) [Pseudomonas aeruginosa UCBPP-PA14]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=26434 PA14_RS23965 WP_003141356.1 5237206..5238078(+) (pilD) [Pseudomonas aeruginosa UCBPP-PA14]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |