Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DV144_RS08505 Genome accession   NZ_CP031328
Coordinates   1449092..1449769 (+) Length   225 a.a.
NCBI ID   WP_002230496.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1444092..1454769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS08485 leuD 1444897..1445538 (-) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  DV144_RS08490 - 1445600..1445854 (-) 255 WP_002213442.1 hypothetical protein -
  DV144_RS08495 leuC 1445951..1447360 (-) 1410 WP_002239102.1 3-isopropylmalate dehydratase large subunit -
  DV144_RS08500 gshA 1447620..1448969 (+) 1350 WP_002223737.1 glutamate--cysteine ligase -
  DV144_RS08505 ysxA/radC 1449092..1449769 (+) 678 WP_002230496.1 DNA repair protein RadC Machinery gene
  DV144_RS08510 - 1449842..1450567 (+) 726 WP_002239101.1 epoxyqueuosine reductase QueH -
  DV144_RS14270 - 1450590..1450718 (-) 129 WP_009347251.1 hypothetical protein -
  DV144_RS08515 - 1450720..1452000 (+) 1281 WP_002220932.1 CAP domain-containing protein -
  DV144_RS08520 hflX 1452005..1453183 (+) 1179 WP_002219225.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24960.80 Da        Isoelectric Point: 5.7262

>NTDB_id=264337 DV144_RS08505 WP_002230496.1 1449092..1449769(+) (ysxA/radC) [Neisseria meningitidis strain M18755]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQEGIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=264337 DV144_RS08505 WP_002230496.1 1449092..1449769(+) (ysxA/radC) [Neisseria meningitidis strain M18755]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGGGCATCGTCCTGTCCGACCCCGA
TACGGTTGCCGATTACCTGCGCTTTCATTTGGGACAGGAAAAAGTCGAAGTCAGCGTCGCACTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGACAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378