Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DV175_RS14540 Genome accession   NZ_CP031324
Coordinates   618415..618819 (+) Length   134 a.a.
NCBI ID   WP_014581680.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 613415..623819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS03455 - 613929..614882 (-) 954 WP_061837757.1 D-2-hydroxyacid dehydrogenase -
  DV175_RS03460 - 615004..615222 (+) 219 WP_002228831.1 DUF2061 domain-containing protein -
  DV175_RS03465 - 615300..615629 (+) 330 WP_061671498.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  DV175_RS03470 - 615658..615909 (+) 252 Protein_568 pilin -
  DV175_RS03480 - 616043..616438 (+) 396 Protein_569 pilin -
  DV175_RS14020 - 617197..617319 (+) 123 Protein_570 pilin -
  DV175_RS03500 - 617455..618462 (-) 1008 WP_115437366.1 IS5 family transposase -
  DV175_RS14540 pilE 618415..618819 (+) 405 WP_014581680.1 pilin Machinery gene
  DV175_RS03510 - 618824..619158 (+) 335 Protein_573 pilin -
  DV175_RS03515 - 619292..619675 (+) 384 Protein_574 pilin -
  DV175_RS03525 lpxC 620306..621229 (+) 924 WP_115437368.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  DV175_RS03540 gnd 622323..623771 (+) 1449 WP_002238518.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14122.66 Da        Isoelectric Point: 7.4030

>NTDB_id=264227 DV175_RS14540 WP_014581680.1 618415..618819(+) (pilE) [Neisseria meningitidis strain M23347]
MFGNHGLGGLLEEGAHGKSPKCHGGNLGDFGEFCKGLGKYVKEVTVANGVVTATMLSSGVNKEIQGRKLSLWAKRQDGSV
KWFCGQPVTRDKADADADADAVTADTAAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 405 bp        

>NTDB_id=264227 DV175_RS14540 WP_014581680.1 618415..618819(+) (pilE) [Neisseria meningitidis strain M23347]
GTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGGAAAATCCCCTAAATGTCATGGTGGGAATTT
AGGGGATTTTGGGGAATTTTGCAAAGGTCTCGGAAAATATGTTAAGGAAGTTACAGTCGCAAACGGCGTCGTTACCGCCA
CAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAGAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTA
AAATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGACGCCGACGCCGACGCCGACGCCGTTACCGCCGACACCGC
CGCCGCCAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAGTGGGAATGACGGGA
TTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(38-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.75

59.701

0.41
  pilE Neisseria gonorrhoeae strain FA1090

66.25

59.701

0.396

Multiple sequence alignment