Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX11_RS21495 Genome accession   NZ_CP025851
Coordinates   4342142..4342771 (+) Length   209 a.a.
NCBI ID   WP_097346584.1    Uniprot ID   -
Organism   Escherichia coli strain 510016     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4337142..4347771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX11_RS21475 ycbZ 4337543..4339303 (-) 1761 WP_000156518.1 Lon protease family protein -
  CXX11_RS21480 matP 4339489..4339941 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXX11_RS21485 ompA 4340017..4341057 (-) 1041 WP_001404956.1 porin OmpA -
  CXX11_RS21490 sulA 4341414..4341923 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX11_RS21495 sxy/tfoX 4342142..4342771 (+) 630 WP_097346584.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX11_RS21500 yccS 4342734..4344896 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CXX11_RS21505 yccF 4344906..4345352 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXX11_RS21510 helD 4345475..4347529 (+) 2055 WP_001400180.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.98 Da        Isoelectric Point: 9.2437

>NTDB_id=264227 CXX11_RS21495 WP_097346584.1 4342142..4342771(+) (sxy/tfoX) [Escherichia coli strain 510016]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELHLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264227 CXX11_RS21495 WP_097346584.1 4342142..4342771(+) (sxy/tfoX) [Escherichia coli strain 510016]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGCATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment