Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DW289_RS03550 Genome accession   NZ_CP031321
Coordinates   715241..715978 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710241..720978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW289_RS03535 (DW289_03535) clpC 710695..713268 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DW289_RS03540 (DW289_03540) yfiH 713398..714129 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  DW289_RS03545 (DW289_03545) rluD 714126..715106 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DW289_RS03550 (DW289_03550) comL 715241..715978 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DW289_RS03560 (DW289_03560) raiA 716249..716590 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DW289_RS03565 (DW289_03565) pheL 716694..716741 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DW289_RS03570 (DW289_03570) pheA 716840..718000 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  DW289_RS03575 (DW289_03575) tyrA 718043..719164 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DW289_RS03580 (DW289_03580) aroF 719175..720245 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DW289_RS03585 (DW289_03585) yfiL 720455..720820 (+) 366 WP_115431567.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=264093 DW289_RS03550 WP_000197686.1 715241..715978(+) (comL) [Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=264093 DW289_RS03550 WP_000197686.1 715241..715978(+) (comL) [Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376