Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APL_RS10435 Genome accession   NC_009053
Coordinates   2198069..2198731 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2193069..2203731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS10400 (APL_1963) - 2193500..2194060 (-) 561 WP_005606066.1 TIGR00730 family Rossman fold protein -
  APL_RS10405 (APL_1964) - 2194123..2194446 (+) 324 WP_005606068.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  APL_RS10410 (APL_1965) crp 2194502..2195176 (-) 675 WP_005599747.1 cAMP-activated global transcriptional regulator CRP Regulator
  APL_RS10415 (APL_1966) - 2195254..2195472 (-) 219 WP_005599748.1 YheU family protein -
  APL_RS10420 (APL_1967) slmA 2195478..2196086 (-) 609 WP_005620316.1 nucleoid occlusion factor SlmA -
  APL_RS10425 (APL_1968) dut 2196192..2196647 (-) 456 WP_005606071.1 dUTP diphosphatase -
  APL_RS10430 (APL_1969) coaBC 2196656..2197861 (-) 1206 WP_005602882.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  APL_RS10435 (APL_1970) radC 2198069..2198731 (+) 663 WP_005599756.1 DNA repair protein RadC Machinery gene
  APL_RS10440 (APL_1971) rpmB 2198900..2199136 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  APL_RS10445 (APL_1972) rpmG 2199148..2199318 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  APL_RS10455 (APL_1973) - 2199731..2200291 (+) 561 WP_005599767.1 hypothetical protein -
  APL_RS10460 (APL_1974) - 2200572..2201936 (+) 1365 WP_009874862.1 diaminobutyrate--2-oxoglutarate transaminase -
  APL_RS10465 (APL_1975) ddc 2202065..2203600 (+) 1536 WP_009874861.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=26408 APL_RS10435 WP_005599756.1 2198069..2198731(+) (radC) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=26408 APL_RS10435 WP_005599756.1 2198069..2198731(+) (radC) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623

Multiple sequence alignment