Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   C1S76_RS14295 Genome accession   NZ_CP025796
Coordinates   2972551..2973168 (-) Length   205 a.a.
NCBI ID   WP_009707563.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967551..2978168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS14280 aceF 2968401..2970308 (+) 1908 WP_102778485.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  C1S76_RS14285 lpdA 2970552..2971982 (+) 1431 WP_005438019.1 dihydrolipoyl dehydrogenase -
  C1S76_RS14295 opaR 2972551..2973168 (-) 618 WP_009707563.1 transcriptional regulator OpaR Regulator
  C1S76_RS14300 hpt 2973489..2974019 (+) 531 WP_005439354.1 hypoxanthine phosphoribosyltransferase -
  C1S76_RS14305 can 2974108..2974776 (-) 669 WP_045418575.1 carbonate dehydratase -
  C1S76_RS14310 - 2975060..2976730 (+) 1671 WP_045418572.1 SulP family inorganic anion transporter -
  C1S76_RS14315 - 2976968..2977885 (+) 918 WP_005439357.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23710.99 Da        Isoelectric Point: 6.2211

>NTDB_id=263902 C1S76_RS14295 WP_009707563.1 2972551..2973168(-) (opaR) [Vibrio owensii strain 051011B]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=263902 C1S76_RS14295 WP_009707563.1 2972551..2973168(-) (opaR) [Vibrio owensii strain 051011B]
ATGGACTCAATAGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCTACTCGTGAAGACTTAGTGGATGAAGTTCTGAACCACGTTGTTCGTCAATTCTCGAACTTCTTGTCT
GATAACATCGACTTAGACATCCATGCACGCGAGAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAGGTTTGGTTCGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCGCTGTTCGTGACCACAAACC
GCACAAACCAACTATTGGTGCAAAACATGTTCATCAAAGCGATCGAACGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCAAATCTGTTCCACGGCATTTGCTACTCTATCTTCGTACAAGCGAACCGCTCTAAGAGCGAAGCTGAGCTATC
AACGCTCGTTAGCGCTTATCTAGATATGCTGTGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment