Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV447_RS08955 Genome accession   NZ_CP031256
Coordinates   1762701..1763438 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain M16807     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1757701..1768438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV447_RS08920 yfiL 1757860..1758225 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  DV447_RS08925 aroF 1758435..1759505 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DV447_RS08930 tyrA 1759516..1760637 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DV447_RS08935 pheA 1760680..1761840 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  DV447_RS08940 pheL 1761939..1761986 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DV447_RS08945 raiA 1762090..1762431 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DV447_RS08955 comL 1762701..1763438 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DV447_RS08960 rluD 1763573..1764553 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV447_RS08965 yfiH 1764550..1765281 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  DV447_RS08970 clpC 1765411..1767984 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=263873 DV447_RS08955 WP_000197686.1 1762701..1763438(-) (comL) [Escherichia coli strain M16807]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=263873 DV447_RS08955 WP_000197686.1 1762701..1763438(-) (comL) [Escherichia coli strain M16807]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376