Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   C1S74_RS14005 Genome accession   NZ_CP025794
Coordinates   2819582..2820199 (-) Length   205 a.a.
NCBI ID   WP_038870500.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2814582..2825199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS13995 aceF 2815698..2817617 (+) 1920 WP_045403781.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  C1S74_RS14000 lpdA 2817861..2819291 (+) 1431 WP_038870499.1 dihydrolipoyl dehydrogenase -
  C1S74_RS14005 opaR 2819582..2820199 (-) 618 WP_038870500.1 transcriptional regulator OpaR Regulator
  C1S74_RS14010 hpt 2820520..2821050 (+) 531 WP_038870502.1 hypoxanthine phosphoribosyltransferase -
  C1S74_RS14015 can 2821137..2821808 (-) 672 WP_045403783.1 carbonate dehydratase -
  C1S74_RS14020 - 2822090..2823760 (+) 1671 WP_045403785.1 SulP family inorganic anion transporter -
  C1S74_RS14025 - 2824013..2824930 (+) 918 WP_045404063.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=263855 C1S74_RS14005 WP_038870500.1 2819582..2820199(-) (opaR) [Vibrio hyugaensis strain 090810a]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=263855 C1S74_RS14005 WP_038870500.1 2819582..2820199(-) (opaR) [Vibrio hyugaensis strain 090810a]
ATGGACTCAATAGCTAAGAGACCTCGCACTAGGCTTTCCCCTTTAAAACGTAAGCAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCAGACATTGCTGAGATTGCACAAGTTTCTGTTGCAACAGTAT
TTAATTACTTCCCAACTCGTGAAGATTTGGTTGATGAAGTACTGAACCACGTTGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATCGACTTAGACCTTCACGCACGTGAAAACATCGCCAACATCACAAACGCAATGATCGAACTTGTTAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAATGGAGCGCATCAACACGTGATGAAGTATGGCCATTGTTCGTGACAACTAACC
GCACTAACCAACTGTTGGTGCAAAACATGTTCATTAAAGCAATTGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGTTACTCTATTTTCGTTCAAGCAAACCGCTCTAAGAGCGAAGCAGAGCTAAC
GAACCTAGTAAGCGCATATTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

72.222

96.585

0.698
  hapR Vibrio cholerae strain A1552

72.222

96.585

0.698

Multiple sequence alignment