Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   C1S74_RS03120 Genome accession   NZ_CP025794
Coordinates   522490..524016 (+) Length   508 a.a.
NCBI ID   WP_045401325.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 517490..529016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS03095 - 517840..518160 (+) 321 WP_038872685.1 STAS domain-containing protein -
  C1S74_RS03100 - 518187..519035 (+) 849 WP_045401312.1 OmpA family protein -
  C1S74_RS03105 - 519032..521131 (+) 2100 WP_045401315.1 SLBB domain-containing protein -
  C1S74_RS03110 - 521131..521817 (+) 687 WP_045401318.1 AAA family ATPase -
  C1S74_RS03115 - 521830..522213 (+) 384 WP_045401322.1 Hpt domain-containing protein -
  C1S74_RS03120 luxO 522490..524016 (+) 1527 WP_045401325.1 sigma-54 dependent transcriptional regulator Regulator
  C1S74_RS03125 - 523991..525064 (+) 1074 WP_045401328.1 glycosyltransferase family 4 protein -
  C1S74_RS03130 - 525222..526406 (+) 1185 WP_045401330.1 glycosyltransferase -
  C1S74_RS03135 - 526417..527589 (+) 1173 WP_045401333.1 glycosyltransferase -
  C1S74_RS03140 - 527582..529012 (+) 1431 WP_045401336.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56823.96 Da        Isoelectric Point: 5.6672

>NTDB_id=263818 C1S74_RS03120 WP_045401325.1 522490..524016(+) (luxO) [Vibrio hyugaensis strain 090810a]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDIAVGLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
STTASVFIVGESGTGKEVCAEAIHRQSDRRNKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATVAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGATKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTVYSKQDKKKFNNIDNEAQYVIKHYDWPGNVRQLQNIIRNIVVLNNEDKVTLAHLPAQLTRKPSKARTVAQP
VELTPAIVSEPSPTQSIENIATEMPMQESVIVPEPVPMSASAQVASPYFNSDGTIRPMWKVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEANLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=263818 C1S74_RS03120 WP_045401325.1 522490..524016(+) (luxO) [Vibrio hyugaensis strain 090810a]
ATGAGACCAAGGGTGTTATTGGTAGAGGACTCTACCTCACTAGCCATACTTTACAAACAGTATGTCAAGGACGAGCCTTA
CGACATCTTTCACGTTGAAACTGGGCGTGAGGCAATCCAATTCATTGAGAGAAGCAAACCACAACTTATAATTCTTGATT
TAAAATTGCCTGACATGTCCGGGGAAGACGTGCTGGATTGGATCAATGAAAACGAAATCCCAACATCAGTGATCATCGCG
ACCGCACACGGTAGCGTTGATATTGCCGTCGGCTTGATTCAAAAAGGCGCAGAAGACTTCCTTGAAAAGCCCATCAACGC
AGACCGACTAAAAACTTCCGTTGCGCTCCATCTCAAGCGTGCCAAGTTAGAGAACCTGGTCGAGAACATTCAATCCACCT
TCGACCGACACAATTACCACGGATTCATCGGTTCTAGTCTACCGATGCAAGCCGTTTACAAAACCATTGATGCTGTTGCT
TCAACGACTGCGAGCGTATTTATCGTTGGCGAAAGTGGTACGGGTAAAGAAGTCTGTGCCGAAGCGATACATCGTCAAAG
TGATCGTCGCAACAAACCTTTTATTGCCATTAACTGTGGCGCAATTCCTCGAGACTTAATGGAGAGCGAAATTTTTGGTC
ACGTCAAAGGGGCGTTTACCGGTGCGACGACTGACCGTAAAGGTGCAGCCACCGTTGCTCATGGTGGCACGCTCTTCCTC
GACGAACTGTGTGAAATGGAATTGGAGATGCAGAAAAAACTGCTGCGCTTCCTACAAACTGGCACATACACGCCGCTCGG
TGCAACTAAAGAGATGAAGGTTGATGTTCGCATCATTTGTGCAACTAACCGCGACCCTCTGACCGAAGTGGAAGAAGGCC
GCTTCCGAGAAGATTTATACTATCGCGTCCATGTTGTGCCAATCGATATGCCTCCGCTTAGAGAACGAGGTAGTGACATT
GTCACGCTCGCTAAGCACTTCCTGACCGTTTACTCCAAGCAGGACAAGAAGAAGTTCAACAATATCGACAACGAAGCGCA
GTACGTGATTAAACATTACGATTGGCCAGGCAACGTCCGCCAATTACAAAACATCATTCGTAACATCGTGGTGTTGAATA
ATGAAGACAAAGTGACCTTGGCCCACTTACCAGCTCAATTGACTCGTAAGCCATCAAAAGCCCGCACAGTAGCTCAACCC
GTGGAATTAACCCCTGCAATTGTATCTGAGCCATCGCCAACACAATCCATTGAAAACATCGCTACCGAAATGCCGATGCA
AGAATCCGTCATCGTACCAGAGCCAGTTCCGATGAGTGCGTCTGCACAAGTGGCTTCACCGTACTTTAATTCGGACGGTA
CGATTCGCCCAATGTGGAAAGTGGAACGCGAAGCGATACAAAATGCGATTGCCTACTGTGACGGCAACGTACTTAACGCC
GCAGTGATGTTAGAGCTGAGCCCTTCTACGGTTTACCGTAAAAAACAAGCGTGGGAAGCAGATGAGGCTAATCTCGAACA
ATCATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.304

97.047

0.488

Multiple sequence alignment