Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   C1S73_RS22535 Genome accession   NZ_CP025793
Coordinates   1104956..1106257 (-) Length   433 a.a.
NCBI ID   WP_081634758.1    Uniprot ID   -
Organism   Vibrio jasicida 090810c     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099956..1111257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS22520 - 1101260..1101808 (+) 549 WP_038867865.1 GNAT family N-acetyltransferase -
  C1S73_RS22525 - 1101884..1102501 (-) 618 WP_038867864.1 HAD family phosphatase -
  C1S73_RS22530 cqsS 1102811..1104856 (+) 2046 WP_038867862.1 hybrid sensor histidine kinase/response regulator Regulator
  C1S73_RS22535 cqsA 1104956..1106257 (-) 1302 WP_081634758.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C1S73_RS22540 ylqF 1106557..1107501 (-) 945 WP_038867858.1 ribosome biogenesis GTPase YlqF -
  C1S73_RS22545 - 1107822..1108787 (-) 966 WP_038867855.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48686.75 Da        Isoelectric Point: 6.9259

>NTDB_id=263815 C1S73_RS22535 WP_081634758.1 1104956..1106257(-) (cqsA) [Vibrio jasicida 090810c]
MPSLQGHAKLCNLTNDSSFIFVKLYSCQRWRFSVLRRELIMSDKSKTKPLPSFVEERLDFYLQDLIEQNENQKHLVLGKR
PKSNAVIMQSNDYLALSHNEQIQKAHRDAIVEHDDNVVMSAIFLQDESSKPAFEALLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDKVDFITVSLAKTFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRL
EKTLDVIKGSDHKRKDLFQRAKELRTGLKQIGFNIRSESQIVALECGSERNTERVRDFLEDRDVFGAVFCRPATGKNKNI
IRFSINADMTPRDINHVLTVCQEAFNHPELEFV

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=263815 C1S73_RS22535 WP_081634758.1 1104956..1106257(-) (cqsA) [Vibrio jasicida 090810c]
ATGCCGAGTTTGCAAGGACACGCAAAGTTATGCAACTTGACTAATGACAGTTCATTCATATTCGTCAAACTATATAGCTG
TCAGCGCTGGCGTTTTTCTGTATTACGAAGAGAACTTATTATGAGTGATAAATCGAAAACGAAACCACTTCCTTCTTTTG
TTGAGGAACGCCTGGATTTTTACCTTCAAGATTTGATTGAACAAAACGAGAACCAAAAGCACTTGGTTCTTGGTAAACGT
CCAAAAAGCAACGCGGTAATCATGCAAAGTAATGACTACCTAGCGTTGTCTCATAACGAACAAATCCAGAAAGCACATCG
GGATGCGATCGTTGAACACGACGATAACGTGGTGATGTCAGCAATCTTCTTACAAGACGAGTCCTCTAAGCCTGCTTTCG
AAGCATTGTTAGCCGACTATGTTGGTATGGGCAGTTGTTTACTTTCCCAATCGGGATGGGCTGCTAACATTGGTTTGCTG
CAGACCATTTGTCCGCCTGAAACACCGGTCTATATCGACTTCTTTGCGCATATGTCATTGTGGGAAGGTATTCGGGCAGC
AGGAGCGCAAGCGCATCCATTCATGCACAACAACATGAACCACTTGCGTAAGCAGATCCAGCGTCATGGCTCAGGCGTCA
TCGTGGTAGATTCGGTCTATAGCACGATTGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTAGTGGTGGATGAATCCCACTCATTAGGAACACACGGGCCTAACGGCTCTGGCTTGGTAAAAGCGCTGGAACT
CACTGATAAAGTCGATTTCATTACTGTCAGTCTGGCAAAAACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAA
AACTCGCGAAAACACTTCCTTTTGTTGCTTATCCAGCGATTTTTAGCTCGACGGTATTGCCTCAAGAAGTGATTCGCTTG
GAGAAAACGTTGGACGTCATTAAAGGGTCCGATCATAAACGTAAAGACCTTTTTCAGCGCGCCAAAGAGCTCAGAACTGG
ATTAAAACAGATTGGGTTTAATATTCGGAGCGAATCTCAAATTGTTGCCTTAGAGTGCGGTAGCGAACGAAATACTGAAC
GTGTGCGTGACTTTCTCGAAGACCGTGATGTTTTTGGCGCAGTATTCTGTCGCCCTGCAACAGGAAAGAACAAAAACATC
ATACGTTTCTCGATCAACGCCGATATGACACCACGAGACATCAACCACGTGCTTACGGTATGCCAGGAGGCGTTTAACCA
TCCAGAATTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.106

89.376

0.51

Multiple sequence alignment