Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   C1S73_RS22530 Genome accession   NZ_CP025793
Coordinates   1102811..1104856 (+) Length   681 a.a.
NCBI ID   WP_038867862.1    Uniprot ID   A0A2A2N939
Organism   Vibrio jasicida 090810c     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1097811..1109856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS22510 dcuC 1098095..1099462 (-) 1368 WP_038867870.1 anaerobic C4-dicarboxylate transporter DcuC -
  C1S73_RS22515 - 1099838..1100962 (-) 1125 WP_038867867.1 fatty acid desaturase -
  C1S73_RS22520 - 1101260..1101808 (+) 549 WP_038867865.1 GNAT family N-acetyltransferase -
  C1S73_RS22525 - 1101884..1102501 (-) 618 WP_038867864.1 HAD family phosphatase -
  C1S73_RS22530 cqsS 1102811..1104856 (+) 2046 WP_038867862.1 hybrid sensor histidine kinase/response regulator Regulator
  C1S73_RS22535 cqsA 1104956..1106257 (-) 1302 WP_081634758.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C1S73_RS22540 ylqF 1106557..1107501 (-) 945 WP_038867858.1 ribosome biogenesis GTPase YlqF -
  C1S73_RS22545 - 1107822..1108787 (-) 966 WP_038867855.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77939.94 Da        Isoelectric Point: 5.7493

>NTDB_id=263814 C1S73_RS22530 WP_038867862.1 1102811..1104856(+) (cqsS) [Vibrio jasicida 090810c]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYVVWEFMFPQPYENLPLRLLCSVLFFGIIARNRMPFQWRRYLPAYYQVAVT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITRVMFAQTFAGIGLATFFAWAAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKQGRKEQYVLSDEDVTLLREVSDDAMN
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQTVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEVVNQIVVTDNGSGIPSEVIRSIFRDFYTTGKSGNYGLGLPFCKKVMRSFGGDIKCQSEVG
EWSQFTMTFPLITSSSVKEIKNELTKLKTILMVTEQNILVAKVTDIARFMGFELTVLDIASALKKKEYEFEFDLIFVDME
SLDSRGSHLDKIESLLSFTEARIVYLFEHHPIERVRNVSFDAIWVETQAWLLNTKATIDRLLYDASYVVTALPVRPLDAT
NKRTIMVVDDNESLRKFTAMLLEKQGFDVIQKEDGQQALDALDIDNIDLILMDIEMPVMDGVEASRRIRGANKAYSAVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=263814 C1S73_RS22530 WP_038867862.1 1102811..1104856(+) (cqsS) [Vibrio jasicida 090810c]
ATGGACGCGATTCGCAAAGTTTATCAGTACGCAGAACCAAACCTAACGCTAGTAGGATGGATGGGCTTTGTTGGATTCCC
AATCTATTACGTGGTGTGGGAGTTTATGTTCCCGCAACCCTATGAAAATCTACCGCTACGTTTACTGTGTTCCGTTTTGT
TCTTCGGCATCATTGCTCGTAATCGTATGCCTTTTCAATGGCGCCGATATTTACCTGCTTACTACCAAGTTGCGGTCACA
CTTTGTTTACCTTGCTTCTTTTTCTACATGTTGTTGATGAATAATTGGTCCAACGTGTGGGTCATGTCCTTTATGTCGGC
GATATTTCTGCATATTTTGTTGGTACATATTACGCGAGTAATGTTTGCTCAAACATTTGCCGGGATTGGACTAGCGACGT
TTTTTGCTTGGGCTGCTCAAGGTTTCCATTTAGAACTCACGATGGATTGGACTCACGTGCCAATCTTTTTGTTTATTTAC
CTGTTTGGTAACTTGTTTTACTTCCGTAATCAGGTCGAGCACGAAGCAAAGGTATCTTTGGCTAAGTCTTTTGGGGCTGG
TATCGCCCATGAAATGCGCAACCCTCTTAGTGGCTTACTAACGTCGATTGATGTTATTCAATCCGTGCTGCCCAACCCTA
AACAGGGGAGGAAAGAGCAATATGTTTTAAGTGATGAAGATGTGACACTGTTACGGGAAGTGAGCGATGACGCAATGAAC
ATCATTCACTCTGGAAACGAGACGATTGATTTGTTGCTTACCTCGATTGATGAAAATCGTGTCTCTCGATCAACATTCAA
GAAACACTCGGCACAAACTGTCGTGGAGAGTGCTATCGAGAGCTTCAGCTATAAACGTTCGACAGACCGTTTTGCTATCT
CTTTGGATGTAAGAAGTGAATTTGATTTCTTGGGTAGTGACACGTTGTTGAAGTATGTGATGTACAACTTATTCAAGAAT
GCCTTTCATCATCGAAGTTCCGAAGATTTTCATATTCACGTCACCATGTACAGTGATGAGGTCGTGAACCAAATTGTTGT
CACGGATAACGGTTCAGGTATTCCGAGCGAGGTGATTCGCAGCATCTTCAGAGATTTTTACACGACCGGTAAATCAGGTA
ATTATGGATTAGGATTGCCATTTTGTAAGAAAGTGATGCGTTCGTTCGGCGGCGACATCAAATGCCAATCAGAAGTTGGT
GAATGGTCTCAGTTCACCATGACGTTTCCACTGATTACCTCAAGCTCGGTTAAAGAAATTAAAAATGAGCTGACCAAACT
GAAGACCATTTTAATGGTTACGGAGCAAAACATATTGGTTGCAAAAGTTACTGATATTGCGCGCTTTATGGGGTTTGAAT
TGACCGTTTTGGATATTGCGTCAGCCCTCAAGAAGAAAGAATATGAGTTCGAGTTTGACCTTATTTTTGTTGATATGGAA
AGCTTGGATTCTAGGGGAAGTCACCTCGATAAAATTGAGTCTTTGCTATCGTTCACAGAAGCTCGTATCGTCTATTTGTT
TGAGCACCATCCAATAGAACGAGTTCGTAATGTGAGTTTTGACGCGATCTGGGTCGAAACCCAAGCGTGGCTATTGAACA
CCAAAGCCACTATTGACCGTTTGCTCTATGATGCGAGCTATGTTGTCACAGCACTGCCAGTGCGCCCTTTAGATGCGACA
AATAAGCGCACGATAATGGTAGTTGATGACAATGAATCTTTACGAAAATTCACCGCAATGTTGTTAGAAAAGCAAGGTTT
TGATGTTATCCAAAAAGAAGATGGACAACAGGCTTTAGATGCGTTGGATATCGATAACATCGACCTTATCTTGATGGACA
TTGAGATGCCAGTAATGGATGGCGTAGAGGCGTCACGACGTATTCGAGGGGCAAATAAAGCGTATTCGGCTGTACCTATT
ATTGCACATACTGGTGATAGTTCTCCGGTAACATTAGATAAGATTGGTTCTTCCGGGATGTCTGATTTTATTGTTAAGCC
CGCAGATAAGAACCGACTCTTCGATAAGATTGCAAACTGGATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2N939

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

47.877

100

0.48

Multiple sequence alignment