Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   C1S73_RS13815 Genome accession   NZ_CP025792
Coordinates   2871898..2872515 (-) Length   205 a.a.
NCBI ID   WP_038870500.1    Uniprot ID   -
Organism   Vibrio jasicida 090810c     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866898..2877515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS13805 aceF 2868001..2869917 (+) 1917 WP_038870497.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  C1S73_RS13810 lpdA 2870161..2871591 (+) 1431 WP_038870499.1 dihydrolipoyl dehydrogenase -
  C1S73_RS13815 opaR 2871898..2872515 (-) 618 WP_038870500.1 transcriptional regulator OpaR Regulator
  C1S73_RS13820 hpt 2872836..2873366 (+) 531 WP_038870502.1 hypoxanthine phosphoribosyltransferase -
  C1S73_RS13825 can 2873453..2874124 (-) 672 WP_038870504.1 carbonate dehydratase -
  C1S73_RS13830 - 2874406..2876076 (+) 1671 WP_038870506.1 SulP family inorganic anion transporter -
  C1S73_RS13835 - 2876330..2877247 (+) 918 WP_038870530.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=263806 C1S73_RS13815 WP_038870500.1 2871898..2872515(-) (opaR) [Vibrio jasicida 090810c]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=263806 C1S73_RS13815 WP_038870500.1 2871898..2872515(-) (opaR) [Vibrio jasicida 090810c]
ATGGACTCAATAGCTAAGAGACCTCGCACTAGGCTTTCCCCTTTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCAGACATTGCTGAGATTGCACAAGTTTCTGTTGCAACAGTAT
TTAATTACTTCCCAACTCGTGAAGATTTGGTTGATGAAGTACTGAACCACGTTGTACGTCAGTTCTCAAACTTCCTTTCG
GATAACATCGACTTAGACCTTCACGCACGTGAAAACATCGCCAACATCACAAACGCAATGATCGAACTTGTTAGCCAAGA
TTGCCACTGGCTAAAAGTATGGTTCGAATGGAGCGCATCAACACGTGATGAAGTATGGCCATTGTTCGTGACAACTAACC
GCACTAACCAACTGTTGGTGCAAAACATGTTCATTAAAGCAATTGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGTTACTCTATTTTCGTTCAAGCAAACCGCTCTAAGAGCGAAGCAGAGCTAAC
GAACCTAGTAAGCGCATATTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

72.222

96.585

0.698
  hapR Vibrio cholerae strain A1552

72.222

96.585

0.698

Multiple sequence alignment