Detailed information NTG0263798

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1S73_RS13550
• Genome accession: NZ_CP025792
• Coordinates: 2821509..2822492 (+)
• Length: 327 a.a.
• NCBI ID: WP_038870341.1
• Uniprot ID: A0A2N7N4T7
• Organism: Vibrio jasicida 090810c
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2816509..2827492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S73_RS13515	ftsB	2816518..2816799 (+)	282	WP_038870281.1	cell division protein FtsB	-
C1S73_RS13520	ispD	2816801..2817508 (+)	708	WP_038870280.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1S73_RS13525	ispF	2817523..2817999 (+)	477	WP_038870279.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1S73_RS13530	truD	2818046..2819089 (+)	1044	WP_038870277.1	tRNA pseudouridine(13) synthase TruD	-
C1S73_RS13535	surE	2819089..2819865 (+)	777	WP_038870275.1	5'/3'-nucleotidase SurE	-
C1S73_RS13540	-	2819865..2820491 (+)	627	WP_038870274.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C1S73_RS13545	-	2820506..2821429 (+)	924	WP_038870272.1	peptidoglycan DD-metalloendopeptidase family protein	-
C1S73_RS13550	rpoS	2821509..2822492 (+)	984	WP_038870341.1	RNA polymerase sigma factor RpoS	Regulator
C1S73_RS13555	mutS	2822582..2825143 (-)	2562	WP_038870271.1	DNA mismatch repair protein MutS	-
C1S73_RS13560	pncC	2825229..2825711 (+)	483	WP_038870269.1	nicotinamide-nucleotide amidase	-
C1S73_RS13565	recA	2825912..2826955 (+)	1044	WP_038870267.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37258.23 Da
• Isoelectric Point: 4.7785

>NTDB_id=263798 C1S73_RS13550 WP_038870341.1 2821509..2822492(+) (rpoS) [Vibrio jasicida 090810c]
MSISNTVTKVEEFEYDNATTGSGSPELEKTSKKTKATAREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIDWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEVD

Nucleotide

• Length: 984 bp

>NTDB_id=263798 C1S73_RS13550 WP_038870341.1 2821509..2822492(+) (rpoS) [Vibrio jasicida 090810c]
ATGAGTATCAGCAACACAGTCACCAAAGTTGAAGAGTTCGAATATGACAACGCAACGACAGGAAGCGGAAGTCCTGAACT
TGAAAAAACATCTAAAAAAACCAAAGCAACAGCTCGCGAAGAATTTGATGCGAGCAATAAAAGTCTAGATGCGACACAAC
TGTACTTAGGCGAAATTGGCTTTTCACCACTACTCACAGCAGAAGAAGAAGTACTTTACGCTCGTAGAGCATTACGTGGT
GATGAAGCTGCCCGTAAGCGAATGATCGAAAGTAATTTACGTCTTGTCGTGAAGATCTCTCGTCGTTACAGCAATCGCGG
TTTAGCACTTCTTGATCTTATCGAAGAAGGTAACCTGGGCTTGATCCGTGCGGTTGAGAAGTTTGATCCTGAACGAGGTT
TCCGTTTTTCAACCTATGCAACTTGGTGGATTCGCCAAACGATTGAGCGTGCGTTGATGAACCAAACTCGCACCATTCGT
TTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACCGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACGGCAGAAGAAATTGCAGCTCAGCTAGATATTCCAGTTGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATCA
GCTCTGTCGATACACCTATCGGTGGTGATGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCAAACAATTCGGATCCT
GAAGTATCCACTCAAGACGATGACATCAAATCCTCGTTGATTGACTGGCTAGAAGAGCTAAATCCAAAACAGAAAGAAGT
GCTTGCTCGTCGTTTTGGTTTACTTGGCTACGAGCCATCAACGCTTGAGGAAGTGGGACGCGAGATTGGTCTAACACGCG
AACGTGTACGTCAGATTCAAGTTGAAGGTTTACGTCGATTGCGCGAAATCTTGATTAAGCAAGGTTTGAACATGGAAAAC
CTGTTCAACGTGGAAGTCGACTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A2N7N4T7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.853