Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   C1S73_RS02520 Genome accession   NZ_CP025792
Coordinates   514732..516258 (+) Length   508 a.a.
NCBI ID   WP_038872671.1    Uniprot ID   A0A2N7MV48
Organism   Vibrio jasicida 090810c     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 509732..521258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS02495 - 510080..510400 (+) 321 WP_038872685.1 STAS domain-containing protein -
  C1S73_RS02500 - 510427..511275 (+) 849 WP_038872683.1 OmpA family protein -
  C1S73_RS02505 - 511272..513371 (+) 2100 WP_038872680.1 SLBB domain-containing protein -
  C1S73_RS02510 - 513371..514057 (+) 687 WP_038872677.1 AAA family ATPase -
  C1S73_RS02515 - 514070..514453 (+) 384 WP_038872674.1 Hpt domain-containing protein -
  C1S73_RS02520 luxO 514732..516258 (+) 1527 WP_038872671.1 sigma-54 dependent transcriptional regulator Regulator
  C1S73_RS02525 - 516233..517312 (+) 1080 WP_038872668.1 glycosyltransferase family 4 protein -
  C1S73_RS02530 - 517465..518649 (+) 1185 WP_038872665.1 glycosyltransferase -
  C1S73_RS02535 - 518660..519832 (+) 1173 WP_038872662.1 glycosyltransferase family 4 protein -
  C1S73_RS02540 - 519825..521255 (+) 1431 WP_038872659.1 oligosaccharide flippase family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56888.08 Da        Isoelectric Point: 6.0753

>NTDB_id=263769 C1S73_RS02520 WP_038872671.1 514732..516258(+) (luxO) [Vibrio jasicida 090810c]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDIAVGLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAIHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATVAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGATKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYSKQDKKKFNNIDNEAQYVIKHYDWPGNVRQLQNIIRNIVVLNNEDKVTVAHLPAQLTRKPSKARVITQP
VEPAPTTVAKPSPIQPVEHIATDMLPQEPVTRPEPIPMSASAQVASPYFNTDGTIRPMWKVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEANLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=263769 C1S73_RS02520 WP_038872671.1 514732..516258(+) (luxO) [Vibrio jasicida 090810c]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCACTAGCCATACTATACAAACAGTATGTCAAGGACGAACCTTA
CGACATCTTTCACGTAGAAACTGGGCGTGAGGCCATCCAATTCATTGAGAGAAGTAAACCACAACTCATCATTCTCGATT
TAAAATTACCCGATATGTCCGGGGAAGACGTTCTTGATTGGATCAATGAGAATGAAATTCCAACCTCAGTCATCATTGCA
ACCGCACATGGCAGCGTAGACATTGCGGTAGGTTTAATTCAAAAAGGTGCGGAAGACTTTCTTGAAAAGCCCATCAACGC
AGACCGACTCAAGACCTCTGTTGCACTTCACCTTAAACGTGCCAAGTTAGAAAACTTAGTAGAAAACATTCAATCTACCT
TCGACCGACACAATTACCATGGATTCATCGGTTCTAGTTTGCCAATGCAAGCCGTCTACAAAACCATTGATGCTGTTGCT
CCAACCTCTGCTAGTGTATTTATCGTTGGTGAGAGTGGTACTGGTAAAGAAGTCTGTGCCGAAGCAATCCATCGTCAAAG
TGATCGTCGTGACAAACCCTTTATTGCCATCAACTGTGGTGCTATTCCACGAGATTTAATGGAAAGCGAAATTTTTGGTC
ACGTTAAAGGCGCATTTACTGGTGCGACAACAGATAGGAAAGGTGCAGCAACCGTTGCTCATGGTGGAACCCTCTTCCTA
GATGAACTGTGTGAGATGGAATTGGAAATGCAGAAAAAGCTGCTCCGTTTTCTACAAACAGGCACTTACACGCCACTTGG
CGCGACCAAAGAAATGAAAGTGGATGTTCGCATCATCTGTGCGACAAACCGCGACCCACTTACGGAAGTCGAAGAAGGCC
GCTTCCGCGAAGATCTATACTATCGCGTCCATGTTGTACCTATTGATATGCCGCCACTCAGAGAGCGAGGTAGTGACATT
GTCACTCTTGCTAAGCATTTTCTGACCACCTACTCCAAGCAGGACAAAAAGAAGTTCAACAATATCGATAATGAAGCACA
GTACGTGATCAAACATTACGACTGGCCGGGGAATGTTCGTCAATTGCAAAACATCATCCGTAACATCGTGGTGTTAAACA
ATGAAGACAAAGTCACCGTCGCGCATCTACCCGCGCAGCTAACTCGCAAGCCATCAAAAGCACGTGTAATTACGCAGCCC
GTAGAACCCGCACCGACCACCGTTGCTAAGCCTTCTCCAATACAGCCCGTTGAACATATCGCTACCGATATGCTGCCTCA
AGAACCGGTAACCAGACCCGAACCGATACCAATGAGTGCTTCTGCACAAGTCGCGTCACCGTACTTTAATACGGACGGCA
CCATTCGACCGATGTGGAAGGTGGAACGGGAAGCAATTCAAAATGCGATAGCCTACTGCGATGGTAACGTACTCAACGCC
GCGGTAATGTTAGAGCTGAGTCCATCTACTGTTTATCGTAAAAAACAAGCGTGGGAAGCGGATGAGGCTAATCTCGAACA
ATCGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7MV48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.696

97.047

0.482

Multiple sequence alignment