Detailed information NTG0263470

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1C92_RS08515
• Genome accession: NZ_CP025705
• Coordinates: 1792319..1793194 (-)
• Length: 291 a.a.
• NCBI ID: WP_113069551.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain R25-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1787319..1798194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1C92_RS08490 (C1C92_08530)	-	1789066..1790250 (+)	1185	WP_113069549.1	tetratricopeptide repeat protein	-
C1C92_RS08495 (C1C92_08535)	mutT	1790259..1790663 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
C1C92_RS08500 (C1C92_08540)	yacG	1790721..1790915 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
C1C92_RS08505 (C1C92_08545)	zapD	1790926..1791648 (-)	723	WP_010675825.1	cell division protein ZapD	-
C1C92_RS08510 (C1C92_08550)	coaE	1791686..1792300 (-)	615	WP_113069550.1	dephospho-CoA kinase	-
C1C92_RS08515 (C1C92_08555)	pilD	1792319..1793194 (-)	876	WP_113069551.1	prepilin peptidase	Machinery gene
C1C92_RS08520 (C1C92_08560)	pilC	1793272..1794513 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
C1C92_RS08525 (C1C92_08565)	pilB	1794641..1796347 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C1C92_RS08530 (C1C92_08570)	-	1796351..1796896 (-)	546	WP_113069552.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C1C92_RS08535 (C1C92_08575)	nadC	1797207..1798070 (-)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32095.19 Da
• Isoelectric Point: 6.5959

>NTDB_id=263470 C1C92_RS08515 WP_113069551.1 1792319..1793194(-) (pilD) [Aeromonas caviae strain R25-6]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGDFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=263470 C1C92_RS08515 WP_113069551.1 1792319..1793194(-) (pilD) [Aeromonas caviae strain R25-6]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGTTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGATTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457