Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV130_RS11400 Genome accession   NZ_CP031248
Coordinates   2089398..2089994 (+) Length   198 a.a.
NCBI ID   WP_000966746.1    Uniprot ID   Q9R2M1
Organism   Streptococcus pneumoniae strain M26365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2084398..2094994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS11380 - 2084444..2085361 (+) 918 WP_050114944.1 dihydrodipicolinate synthase family protein -
  DV130_RS11385 - 2085379..2086263 (+) 885 WP_000222983.1 ROK family protein -
  DV130_RS11390 - 2086279..2087130 (-) 852 WP_000360333.1 SIS domain-containing protein -
  DV130_RS11395 pbp2b 2087330..2089387 (+) 2058 WP_078132150.1 penicillin-binding protein 2B -
  DV130_RS11400 recR 2089398..2089994 (+) 597 WP_000966746.1 recombination mediator RecR Machinery gene
  DV130_RS11405 - 2090170..2091213 (+) 1044 WP_000814642.1 D-alanine--D-alanine ligase -
  DV130_RS11410 murF 2091297..2092670 (+) 1374 WP_114865207.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DV130_RS11415 - 2092765..2093469 (+) 705 WP_001055246.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21678.82 Da        Isoelectric Point: 4.5622

>NTDB_id=263439 DV130_RS11400 WP_000966746.1 2089398..2089994(+) (recR) [Streptococcus pneumoniae strain M26365]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDSTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=263439 DV130_RS11400 WP_000966746.1 2089398..2089994(+) (recR) [Streptococcus pneumoniae strain M26365]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATTCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9R2M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48