Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DV130_RS08050 Genome accession   NZ_CP031248
Coordinates   1511200..1512297 (-) Length   365 a.a.
NCBI ID   WP_001866149.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506200..1517297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS08035 - 1506666..1508288 (-) 1623 WP_000958769.1 ATP-binding cassette domain-containing protein -
  DV130_RS08040 trpS 1508494..1509519 (+) 1026 WP_000165445.1 tryptophan--tRNA ligase -
  DV130_RS08045 guaB 1509671..1511149 (+) 1479 WP_114865185.1 IMP dehydrogenase -
  DV130_RS08050 recF 1511200..1512297 (-) 1098 WP_001866149.1 DNA replication/repair protein RecF Machinery gene
  DV130_RS08055 yaaA 1512300..1512668 (-) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  DV130_RS08060 - 1512827..1514077 (+) 1251 WP_000424271.1 pitrilysin family protein -
  DV130_RS08065 - 1514074..1515357 (+) 1284 WP_000170217.1 pitrilysin family protein -
  DV130_RS08070 rodZ 1515399..1516220 (+) 822 WP_050072509.1 cytoskeleton protein RodZ -
  DV130_RS08075 pgsA 1516231..1516776 (+) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41916.00 Da        Isoelectric Point: 9.0596

>NTDB_id=263395 DV130_RS08050 WP_001866149.1 1511200..1512297(-) (recF) [Streptococcus pneumoniae strain M26365]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNTTDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=263395 DV130_RS08050 WP_001866149.1 1511200..1512297(-) (recF) [Streptococcus pneumoniae strain M26365]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAGCTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGTTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATACAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAGGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.178

100

0.992
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46