Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   DV130_RS07670 Genome accession   NZ_CP031248
Coordinates   1445078..1445971 (-) Length   297 a.a.
NCBI ID   WP_000343888.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440078..1450971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS07645 - 1441552..1442043 (-) 492 WP_000671990.1 hypothetical protein -
  DV130_RS07650 - 1442024..1442620 (-) 597 WP_000687787.1 ATP-binding cassette domain-containing protein -
  DV130_RS07655 - 1442617..1443099 (-) 483 WP_001232094.1 stage II sporulation protein M -
  DV130_RS07660 - 1443096..1444232 (-) 1137 WP_000698828.1 hypothetical protein -
  DV130_RS07665 - 1444239..1444535 (-) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  DV130_RS07670 comR 1445078..1445971 (-) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  DV130_RS12570 - 1445992..1446186 (-) 195 WP_000756776.1 hypothetical protein -
  DV130_RS07680 - 1446336..1446569 (-) 234 WP_000136447.1 acyl carrier protein -
  DV130_RS07685 plsX 1446575..1447567 (-) 993 WP_050114046.1 phosphate acyltransferase PlsX -
  DV130_RS07690 recO 1447564..1448334 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  DV130_RS07695 - 1448331..1449500 (-) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  DV130_RS07700 - 1449649..1450659 (+) 1011 WP_050150915.1 YeiH family protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 34517.01 Da        Isoelectric Point: 4.6498

>NTDB_id=263385 DV130_RS07670 WP_000343888.1 1445078..1445971(-) (comR) [Streptococcus pneumoniae strain M26365]
MDELKREIGYKIKTIRRSCGKTQIDICGDESELTIRQLARIENGQALATLPKLLLIADKLGVSLQNIVDVKVIEIPKGFL
KLKDELIHSQTYADKGRIERKEAILEEIYENYYENLPEEEQLIVDVTQARFDIYGSSDVTYGLGLVEEYFQQLLKKKYFS
VNDLLIIELYFFCCAMGLEDKEHFEELAQKVLLCSEYEDKASLVQMEKVLLSLFIQIQTEDSLIYIQTFEKIIAKTRHVF
YRPHLFLLKAKYALFVDKNILEAESFYEKAISLAELLDDQVLVQRILAEKQIDFPTT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=263385 DV130_RS07670 WP_000343888.1 1445078..1445971(-) (comR) [Streptococcus pneumoniae strain M26365]
ATGGATGAGTTGAAACGTGAAATTGGTTATAAAATCAAAACTATTAGGCGATCTTGTGGAAAAACTCAGATAGATATTTG
TGGTGATGAATCAGAGTTGACGATTCGTCAGCTAGCACGTATTGAAAATGGGCAAGCTTTAGCAACACTTCCTAAATTAT
TATTGATTGCGGATAAACTTGGAGTATCATTACAGAATATTGTGGATGTTAAGGTTATAGAGATTCCAAAAGGATTCCTA
AAACTCAAAGATGAGCTGATTCATTCTCAAACCTACGCTGATAAGGGAAGAATCGAACGAAAAGAAGCTATACTTGAGGA
AATATATGAAAACTATTATGAGAATTTGCCTGAGGAAGAGCAGTTAATTGTGGATGTGACACAAGCTCGTTTTGATATTT
ATGGTAGTTCAGATGTGACCTACGGTTTAGGGTTAGTGGAAGAATATTTCCAGCAGTTATTAAAAAAGAAATATTTTTCT
GTAAATGATTTGTTGATTATTGAATTGTATTTCTTTTGTTGTGCTATGGGATTAGAAGATAAAGAACATTTTGAGGAGTT
AGCTCAAAAAGTATTGCTATGTTCAGAATATGAAGATAAGGCTAGCCTAGTTCAAATGGAAAAAGTTCTTCTGAGCCTAT
TTATCCAAATTCAGACAGAAGATAGTCTGATATATATTCAAACATTTGAGAAAATTATTGCTAAAACAAGACATGTTTTT
TACCGACCTCATCTATTTTTGCTAAAGGCAAAATATGCTTTATTTGTAGACAAGAATATTTTAGAGGCAGAAAGTTTCTA
TGAAAAGGCGATTTCTCTAGCAGAATTGCTAGACGATCAGGTATTAGTTCAGAGAATTTTAGCAGAAAAACAGATAGATT
TCCCAACAACCTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(76-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

36.667

100

0.37