Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DV130_RS07690 Genome accession   NZ_CP031248
Coordinates   1447564..1448334 (-) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain M26365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1442564..1453334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS07655 - 1442617..1443099 (-) 483 WP_001232094.1 stage II sporulation protein M -
  DV130_RS07660 - 1443096..1444232 (-) 1137 WP_000698828.1 hypothetical protein -
  DV130_RS07665 - 1444239..1444535 (-) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  DV130_RS07670 comR 1445078..1445971 (-) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  DV130_RS12570 - 1445992..1446186 (-) 195 WP_000756776.1 hypothetical protein -
  DV130_RS07680 - 1446336..1446569 (-) 234 WP_000136447.1 acyl carrier protein -
  DV130_RS07685 plsX 1446575..1447567 (-) 993 WP_050114046.1 phosphate acyltransferase PlsX -
  DV130_RS07690 recO 1447564..1448334 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  DV130_RS07695 - 1448331..1449500 (-) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  DV130_RS07700 - 1449649..1450659 (+) 1011 WP_050150915.1 YeiH family protein -
  DV130_RS07705 - 1450895..1451332 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=263386 DV130_RS07690 WP_000616164.1 1447564..1448334(-) (recO) [Streptococcus pneumoniae strain M26365]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=263386 DV130_RS07690 WP_000616164.1 1447564..1448334(-) (recO) [Streptococcus pneumoniae strain M26365]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992