Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV129_RS11200 Genome accession   NZ_CP031247
Coordinates   2035318..2035914 (+) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae strain M23734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2030318..2040914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS11180 - 2030364..2031281 (+) 918 WP_001281525.1 dihydrodipicolinate synthase family protein -
  DV129_RS11185 - 2031299..2032183 (+) 885 WP_000222983.1 ROK family protein -
  DV129_RS11190 - 2032199..2033050 (-) 852 WP_000360331.1 MurR/RpiR family transcriptional regulator -
  DV129_RS11195 pbp2b 2033250..2035307 (+) 2058 WP_078065385.1 penicillin-binding protein 2B -
  DV129_RS11200 recR 2035318..2035914 (+) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  DV129_RS11205 - 2036109..2037152 (+) 1044 WP_000814643.1 D-alanine--D-alanine ligase -
  DV129_RS11210 murF 2037236..2038609 (+) 1374 WP_000778903.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DV129_RS11215 - 2038596..2039207 (+) 612 WP_000857980.1 NUDIX hydrolase -
  DV129_RS11220 - 2039298..2040002 (+) 705 WP_001055246.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=263324 DV129_RS11200 WP_000966743.1 2035318..2035914(+) (recR) [Streptococcus pneumoniae strain M23734]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=263324 DV129_RS11200 WP_000966743.1 2035318..2035914(+) (recR) [Streptococcus pneumoniae strain M23734]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485