Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DV129_RS08165 Genome accession   NZ_CP031247
Coordinates   1502122..1503219 (-) Length   365 a.a.
NCBI ID   WP_000266662.1    Uniprot ID   Q8DMX3
Organism   Streptococcus pneumoniae strain M23734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497122..1508219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS08150 - 1497588..1499210 (-) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -
  DV129_RS08155 trpS 1499416..1500441 (+) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  DV129_RS08160 guaB 1500593..1502071 (+) 1479 WP_000073428.1 IMP dehydrogenase -
  DV129_RS08165 recF 1502122..1503219 (-) 1098 WP_000266662.1 DNA replication/repair protein RecF Machinery gene
  DV129_RS08170 yaaA 1503222..1503590 (-) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  DV129_RS08175 - 1503749..1504999 (+) 1251 WP_000424262.1 pitrilysin family protein -
  DV129_RS08180 - 1504996..1506279 (+) 1284 WP_000170194.1 pitrilysin family protein -
  DV129_RS08185 rodZ 1506321..1507142 (+) 822 WP_001227958.1 cytoskeleton protein RodZ -
  DV129_RS08190 pgsA 1507153..1507698 (+) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41916.00 Da        Isoelectric Point: 9.0596

>NTDB_id=263280 DV129_RS08165 WP_000266662.1 1502122..1503219(-) (recF) [Streptococcus pneumoniae strain M23734]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=263280 DV129_RS08165 WP_000266662.1 1502122..1503219(-) (recF) [Streptococcus pneumoniae strain M23734]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

100

100

1
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46

Multiple sequence alignment