Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NEUT_RS11685 Genome accession   NC_008344
Coordinates   2428067..2429530 (+) Length   487 a.a.
NCBI ID   WP_011635296.1    Uniprot ID   Q0ADR2
Organism   Nitrosomonas eutropha C91     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2423067..2434530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS11660 (Neut_2298) - 2423862..2424623 (-) 762 WP_011635291.1 endonuclease/exonuclease/phosphatase family protein -
  NEUT_RS11665 (Neut_2299) nadA 2424695..2425795 (-) 1101 WP_011635292.1 quinolinate synthase NadA -
  NEUT_RS11670 (Neut_2300) lptC 2426085..2426666 (+) 582 WP_011635293.1 LPS export ABC transporter periplasmic protein LptC -
  NEUT_RS11675 (Neut_2301) lptA 2426772..2427287 (+) 516 WP_240142186.1 lipopolysaccharide transport periplasmic protein LptA -
  NEUT_RS11680 (Neut_2302) lptB 2427339..2428061 (+) 723 WP_011635295.1 LPS export ABC transporter ATP-binding protein -
  NEUT_RS11685 (Neut_2303) rpoN/rpoN1 2428067..2429530 (+) 1464 WP_011635296.1 RNA polymerase factor sigma-54 Machinery gene
  NEUT_RS11690 (Neut_2304) raiA 2429705..2430040 (+) 336 WP_011635297.1 ribosome-associated translation inhibitor RaiA -
  NEUT_RS11695 (Neut_2305) ptsN 2430281..2430751 (+) 471 WP_011635298.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NEUT_RS11700 (Neut_2306) hprK 2430738..2431709 (+) 972 WP_011635299.1 HPr(Ser) kinase/phosphatase -
  NEUT_RS11705 (Neut_2307) - 2431895..2432509 (+) 615 WP_011635300.1 flavin prenyltransferase UbiX -
  NEUT_RS11710 (Neut_2308) - 2432561..2433199 (-) 639 WP_011635301.1 5-formyltetrahydrofolate cyclo-ligase -
  NEUT_RS11715 (Neut_2309) mutY 2433192..2434322 (-) 1131 WP_011635302.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 55252.02 Da        Isoelectric Point: 5.1915

>NTDB_id=26328 NEUT_RS11685 WP_011635296.1 2428067..2429530(+) (rpoN/rpoN1) [Nitrosomonas eutropha C91]
MKPTLQLKLSTGLTLTPQLKQSIQLLQLSALELNQEISRIVQENPLLELDEDIDQEKLETEGQDSSLVSSDLSTTAEANE
SHDIRENTEISNDWLDDSLYSDQGAFLDTRRQDDEEYDQDYSRLVSKPASLREHLLMQISLRQRCERKKKITALLVDSLD
DNGYFTQDLEELAKLLPVELEIDITDLKSALAYIQQLDPPGVGARNLRECLSIQLSALPDATPLRTEALKLVNEHLESVA
AKNFPLLRKVLGCDETCLQSVYQLITQLNPKPGDDFNATTARYVIPDVIVTKSAKGWVAQLNSDSVPRVRVNHLYADILK
QNRNEAIRPLMEQLKEARWLIRNIDQRMVTILRASQAIIDCQQAFLEHGETAVRPLVMREIAEVLGLHESTISRITTQKY
MRTPHGIFELKYFFGSHIPAETGEAHSAIAIRGLIKQLIQNEDRKKPLNDSQVSQILAQQGIVVARRTVAKYREFMHIPP
TNLRKIP

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=26328 NEUT_RS11685 WP_011635296.1 2428067..2429530(+) (rpoN/rpoN1) [Nitrosomonas eutropha C91]
ATGAAGCCGACTCTGCAACTCAAGCTTTCTACCGGCCTTACACTGACACCGCAACTGAAACAATCAATTCAGCTGCTTCA
ACTATCTGCACTTGAACTCAACCAGGAAATCTCACGTATTGTCCAAGAAAACCCTTTGCTTGAGCTGGATGAAGATATCG
ATCAAGAAAAACTTGAAACTGAAGGACAAGATTCTTCGTTAGTATCATCAGATTTATCTACTACAGCAGAAGCTAATGAA
TCCCATGATATTAGAGAAAACACTGAAATATCGAACGACTGGCTAGATGACTCATTGTATTCAGATCAGGGGGCTTTTTT
AGACACACGTAGACAAGATGATGAGGAGTATGATCAGGACTATTCTCGCCTGGTTAGCAAACCCGCCAGCTTGCGTGAAC
ACCTGCTCATGCAAATCAGCTTGAGGCAACGTTGCGAACGAAAAAAGAAAATTACCGCGCTGCTGGTGGATAGTCTGGAC
GATAATGGTTATTTTACTCAGGATCTGGAAGAGCTTGCCAAGTTACTTCCGGTTGAGCTGGAAATCGACATCACGGACCT
GAAGTCAGCCCTTGCTTATATTCAGCAACTGGATCCGCCCGGCGTAGGAGCACGCAATCTGCGGGAGTGTCTGTCTATAC
AGCTTTCAGCATTGCCGGATGCAACGCCACTACGAACGGAAGCACTCAAACTGGTCAATGAGCACCTGGAAAGTGTCGCT
GCCAAAAATTTCCCATTGCTCAGGAAAGTTCTTGGCTGTGATGAAACCTGTTTACAGTCAGTTTACCAGTTGATCACTCA
ACTCAATCCCAAGCCTGGCGATGATTTCAACGCAACAACAGCACGTTATGTCATTCCTGATGTGATTGTGACCAAATCGG
CTAAAGGCTGGGTGGCACAGCTCAATTCCGATTCAGTTCCGCGTGTGCGCGTTAACCATTTATATGCCGACATTCTGAAG
CAGAATCGTAATGAAGCAATCCGACCACTGATGGAGCAACTGAAAGAGGCCCGCTGGCTGATCAGAAATATCGACCAGCG
CATGGTTACCATACTCCGGGCCAGTCAGGCGATTATTGATTGCCAGCAAGCATTCCTGGAGCATGGCGAAACAGCTGTGC
GCCCCCTTGTTATGCGTGAAATTGCCGAAGTTCTTGGATTACATGAGTCAACCATTTCTCGTATCACAACCCAGAAGTAT
ATGCGGACACCGCACGGTATCTTTGAGCTCAAATATTTCTTTGGAAGCCATATTCCCGCTGAAACGGGTGAAGCACATTC
AGCCATAGCTATTCGTGGACTTATTAAGCAATTGATCCAGAATGAGGATCGAAAAAAGCCACTTAATGATAGTCAAGTTT
CACAAATACTCGCGCAGCAGGGTATTGTTGTTGCTCGCCGTACTGTTGCAAAATATCGGGAGTTCATGCATATTCCCCCG
ACTAATTTACGTAAAATACCCTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-485)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(122-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0ADR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.151

100

0.493

Multiple sequence alignment