Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NEUT_RS06245 Genome accession   NC_008344
Coordinates   1286548..1287351 (-) Length   267 a.a.
NCBI ID   WP_164502677.1    Uniprot ID   -
Organism   Nitrosomonas eutropha C91     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1281548..1292351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS06230 (Neut_1227) - 1283338..1284897 (-) 1560 WP_011634301.1 amino acid permease -
  NEUT_RS06235 (Neut_1228) - 1285421..1286305 (-) 885 WP_011634302.1 recombination-associated protein RdgC -
  NEUT_RS06245 (Neut_1229) comL 1286548..1287351 (-) 804 WP_164502677.1 outer membrane protein assembly factor BamD Machinery gene
  NEUT_RS06250 (Neut_1230) rluD 1287350..1288381 (+) 1032 WP_110332631.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NEUT_RS06255 (Neut_1231) glnA 1288625..1290010 (+) 1386 WP_041353751.1 type I glutamate--ammonia ligase -
  NEUT_RS06260 (Neut_1232) - 1290164..1290634 (+) 471 WP_011634306.1 hypothetical protein -
  NEUT_RS13965 - 1291223..1291224 (-) 2 WP_166484975.1 IS5 family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30821.06 Da        Isoelectric Point: 6.1431

>NTDB_id=26320 NEUT_RS06245 WP_164502677.1 1286548..1287351(-) (comL) [Nitrosomonas eutropha C91]
MLRQFLAGWLMVLLAACGILSEKTVDNSQWSASKFYIEAKNELNEGNYSAAVKLFEALEARYPYGRFAQQAQLEIAYAYY
KDQEQASAIAAADRFIQLYPHHHNIDYAYYIKGLASFNDDQGLLGYITTKIIKQDLSERDAKASRESFEDFKLLVTRYPD
SKYTPDALQRMAYLVNALARGEIHVARYYMKRKAYIAALRRAQFVLEEYPQTPATEEALYIMASAYNELGLIDLREDTEK
VIKKNFPESAYLTDSGSLVEKPWWKIW

Nucleotide


Download         Length: 804 bp        

>NTDB_id=26320 NEUT_RS06245 WP_164502677.1 1286548..1287351(-) (comL) [Nitrosomonas eutropha C91]
ATGTTGCGACAATTTTTGGCAGGGTGGTTGATGGTATTGTTGGCCGCATGTGGCATTCTGTCCGAAAAAACGGTTGATAA
CAGCCAGTGGTCTGCGAGTAAATTTTATATCGAAGCCAAAAATGAGCTTAACGAGGGTAATTATTCAGCTGCAGTCAAAT
TGTTCGAAGCACTGGAAGCCCGTTATCCCTATGGACGGTTTGCTCAACAGGCACAGCTTGAAATAGCTTACGCCTACTAT
AAGGATCAGGAACAGGCCTCAGCCATTGCAGCGGCAGACCGGTTTATCCAGCTCTACCCACATCATCATAATATTGATTA
TGCTTATTATATCAAGGGACTCGCTAGCTTTAACGATGATCAAGGTCTATTGGGGTATATAACCACCAAAATCATTAAGC
AGGATTTGAGCGAACGGGATGCAAAGGCTTCAAGAGAATCATTTGAAGATTTCAAGCTGCTGGTAACCCGTTATCCGGAT
AGTAAATATACGCCTGATGCACTGCAGCGCATGGCTTATCTGGTCAATGCGCTGGCAAGAGGTGAAATTCATGTCGCCCG
GTATTATATGAAACGGAAAGCTTACATAGCAGCTCTCAGGCGTGCGCAGTTTGTACTGGAAGAATACCCGCAAACGCCTG
CGACAGAAGAAGCGCTGTACATCATGGCAAGCGCCTACAATGAGTTGGGCCTGATCGATTTGCGCGAAGATACAGAAAAA
GTCATCAAAAAAAATTTCCCGGAAAGTGCTTACCTTACAGATTCCGGTTCGCTGGTAGAAAAACCCTGGTGGAAAATCTG
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.426

100

0.483
  comL Neisseria gonorrhoeae MS11

46.296

100

0.468

Multiple sequence alignment