Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C0058_RS30520 Genome accession   NZ_CP025624
Coordinates   6473616..6474023 (-) Length   135 a.a.
NCBI ID   WP_087693247.1    Uniprot ID   -
Organism   Pseudomonas sp. NC02     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6468616..6479023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0058_RS30505 (C0058_30510) - 6470618..6472669 (-) 2052 WP_003213729.1 methyl-accepting chemotaxis protein -
  C0058_RS30510 (C0058_30515) - 6472666..6473190 (-) 525 WP_003213731.1 chemotaxis protein CheW -
  C0058_RS30515 (C0058_30520) pilH 6473203..6473568 (-) 366 WP_003213734.1 twitching motility response regulator PilH -
  C0058_RS30520 (C0058_30525) pilG 6473616..6474023 (-) 408 WP_087693247.1 twitching motility response regulator PilG Regulator
  C0058_RS30525 (C0058_30530) gshB 6474263..6475216 (+) 954 WP_003213738.1 glutathione synthase -
  C0058_RS30530 (C0058_30535) - 6475294..6476193 (+) 900 WP_003213740.1 energy transducer TonB -
  C0058_RS30535 (C0058_30540) - 6476261..6476830 (+) 570 WP_102370095.1 YqgE/AlgH family protein -
  C0058_RS30540 (C0058_30545) ruvX 6476830..6477267 (+) 438 WP_003213744.1 Holliday junction resolvase RuvX -
  C0058_RS30545 (C0058_30550) pyrR 6477340..6477846 (+) 507 WP_003213746.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C0058_RS30550 (C0058_30555) - 6477871..6478875 (+) 1005 WP_003213748.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14896.40 Da        Isoelectric Point: 7.3838

>NTDB_id=263148 C0058_RS30520 WP_087693247.1 6473616..6474023(-) (pilG) [Pseudomonas sp. NC02]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALAKIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSVIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=263148 C0058_RS30520 WP_087693247.1 6473616..6474023(-) (pilG) [Pseudomonas sp. NC02]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACGGCCGAAACACTGTT
GAAGAACGTAGGGTGCGACGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCAAGATTGTTGACCATCATCCACACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTAATCATGCTGTCCTCCAAAGATGGTCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCTGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGCGTGATCAAGGCCTATGTACCGGGCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72

92.593

0.667
  vicR Streptococcus mutans UA159

40.476

93.333

0.378

Multiple sequence alignment