Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DV131_RS03270 Genome accession   NZ_CP031246
Coordinates   591738..592508 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain M26368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586738..597508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS03250 - 588703..589140 (+) 438 WP_050209603.1 CoA-binding protein -
  DV131_RS11715 - 589181..589384 (+) 204 WP_050209605.1 hypothetical protein -
  DV131_RS03260 - 589413..590423 (-) 1011 WP_000009170.1 YeiH family protein -
  DV131_RS03265 - 590572..591741 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  DV131_RS03270 recO 591738..592508 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  DV131_RS03275 plsX 592505..593497 (+) 993 WP_050217855.1 phosphate acyltransferase PlsX -
  DV131_RS03280 - 593503..593736 (+) 234 WP_000136447.1 acyl carrier protein -
  DV131_RS03285 - 593782..594072 (+) 291 Protein_573 IS5/IS1182 family transposase -
  DV131_RS03290 blpU 594275..594505 (+) 231 WP_001093486.1 bacteriocin-like peptide BlpU -
  DV131_RS12065 - 594508..594633 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  DV131_RS11720 - 595041..595235 (+) 195 WP_000756776.1 hypothetical protein -
  DV131_RS03300 comR 595256..596149 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  DV131_RS03305 - 596692..596988 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=263140 DV131_RS03270 WP_000616164.1 591738..592508(+) (recO) [Streptococcus pneumoniae strain M26368]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=263140 DV131_RS03270 WP_000616164.1 591738..592508(+) (recO) [Streptococcus pneumoniae strain M26368]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992